Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211486g00015 ATGGTAAAAAATCCTACTTATCGTGAATTGAAGAGATGCGTGGAGGTGGTGATTGAAAACTTGAAGGTGGAGGTGGTGGTTGAAAACTTGAAGGGCTCGACATTTGTGGTGATGGATGGTTGTCACCGGAGTATGGAAGAAGAAGGCGTCACAGCAGCGATGCTAAGCGAAGAGCTAGGGCTTGAACTCAAACAAATCAAATTTTGGTTTCAAAATAGAAGGACCAAAGCAAAGGCTCAAGCTGATAGAACAATTAATTGTTCTCTTCGGAGAGAGAATGAGAAAATCGTAGCAGAAAACTTGATGTTTAGAGAGACATTGAAGAATTTAGTTTGCGTAAATTGTGGTGGTCCAGCTCTTCCTGATGATGATGCCCAACATCGCATGGAACAACTAATCCTCCAAAACAAATTTCTCAAAGAACAGCTACAATGTGATAGGTCCAAGTACAGTGTCATCCCATTATTATCTGGAAGCAGTAGCGTTACTACTACTAATAATAATCCTTCTGAAACCACCACAAGAATTGCAATACCAACATGTTTCATTGATCCTCACATTCAATCTTCTCTCTGCCAAAACACTACTAGAATCCTAATTGGTATACCTACTGCCGTGGTGGACGGCTTCTTCATGGAGGAGGAGATAATAAGAATGAGAGAGGCTGCATCTAAGGCCATGGAGGAATTAGCCAGGCTTCTGCGCATGAACGAGCCTTTCTGGTATAGGTCAACTGTTAATAACTGCTTCATTCTTCATCGTCAGACCTACGACAGCGTGTTCCACAGTGTTGGCTTGAGGTGTGGAGCACGCAGAGAGGCATCAAAAAATTCACGAGGGGTGGCCATGAATGGAATCAAATTGGTTGACATGTTCTTAGATTCGAGCAAAGATAATGGAAGTATACTCAACAGTGGTTTGCCAGAGACCCGAAATGGCGCCTTGCAATTGATGTATGGAGAGATACACACTCTTTCGCCTATGATTAGGCCTCGGGAATTCTTCTTCCTGCGATATTGTGTGCAAGTTGATGTAGGTGTATGGATCATAGCAGATGTCTCATTTGATTCCTCCAGATTCATTAATTCCCTCACTTGGAAGCTTCCTTCTGGATGCTTAATCCACGACATGAACAGTGGCTACTCCACTGTTACTATATATTAG 1164 0.4261 MVKNPTYRELKRCVEVVIENLKVEVVVENLKGSTFVVMDGCHRSMEEEGVTAAMLSEELGLELKQIKFWFQNRRTKAKAQADRTINCSLRRENEKIVAENLMFRETLKNLVCVNCGGPALPDDDAQHRMEQLILQNKFLKEQLQCDRSKYSVIPLLSGSSSVTTTNNNPSETTTRIAIPTCFIDPHIQSSLCQNTTRILIGIPTAVVDGFFMEEEIIRMREAASKAMEELARLLRMNEPFWYRSTVNNCFILHRQTYDSVFHSVGLRCGARREASKNSRGVAMNGIKLVDMFLDSSKDNGSILNSGLPETRNGALQLMYGEIHTLSPMIRPREFFFLRYCVQVDVGVWIIADVSFDSSRFINSLTWKLPSGCLIHDMNSGYSTVTIY 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211486g00015 387 Pfam START domain 310 386 IPR002913 GO:0008289
Stsc211486g00015 387 SUPERFAMILY Bet v1-like 213 387 - -
Stsc211486g00015 387 ProSitePatterns 'Homeobox' domain signature. 55 78 IPR017970 GO:0000981|GO:0006355
Stsc211486g00015 387 ProSiteProfiles START domain profile. 212 387 IPR002913 GO:0008289
Stsc211486g00015 387 ProSiteProfiles 'Homeobox' domain profile. 55 80 IPR001356 GO:0003677
Stsc211486g00015 387 SUPERFAMILY Homeodomain-like 53 85 IPR009057 -
Stsc211486g00015 387 Gene3D - 48 85 - -
Stsc211486g00015 387 Coils Coil 122 142 - -
Stsc211486g00015 387 CDD homeodomain 55 80 IPR001356 GO:0003677
Stsc211486g00015 387 Pfam Homeodomain 54 78 IPR001356 GO:0003677
Stsc211486g00015 387 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 54 385 IPR042160 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211486g00015 Stsc-Chr211486 139908 143982 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211486g00015 55 385 Homeobox Transcription Factor Family AT1G73360 38.162 1.26e-60 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Stsc211486g00015 START 1.5e-10 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211486g00015 K09338 - vvi:100254711 249.595