Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211485g00043 ATGGTGAAGATCTCGCTTGGTGGATACGACGATGGGGAAGGACCTAGCAACCGCATCCAGAAGCGACACAGGATTGAACCAGAAGATGGCCAATCAAGCACAACCCAAAAGGAGCAGCAGCATCAAGGAGATAGCCACCTGCCTAAAATTGCAGAGCATGATGAAAGCCCTGCTCGATCTGTAACCGACGATAAGGATAGGTCCATTTCTGTCACCATCACCGACCCCGATGTCCTCGATTGCTGCATTTGCTATGAACCCTTGACCGCCCCTGTTTTCCAGTGTGAGAATGGTCACATTGCTTGTTCTAATTGCTGTGCCAGACTTGGCAACAAGTGTGCCATGTGCTCAATGCCTATTGGCTATAATCGCTGCAGAGCTATTGAGAAGGTTCTGGAATCTATTAAAATCTCATGCCTCAATGCAAAATATGGTTGTAAGCATATGTTTTGTTACAGTAAAAAAAATGAACACGAGAAGGAGTGTAAGTTTCTGCCATGTTTATGCCCCCACTCAGGGTGTGACTTTCTTGCTTCCTCTGAGGAGTTATCCCTCCACTTTAGACATAGGCATATACATTCTGGAATACAGTTTGCATATGATAAATTTTTCACTGTCTTCTTAAATATTGACCACAAAACAATTGTTCTTCAAGAGAAGAATGATGCTAATCTGTTTCTTATTCACAATAACCATGAGCTTCTAGGGAATTTAATCCATATAACTTGCATTGGCCCCAAATCCAGGAGAGGGTTTCATTATGATATATTGGCTAGGTCACAGGGAAGCTCTCTAATATTGCAATCTTATACCAAGATCGTTCAAGGTCACTCTGCTGATGCCCCTTCGACAGGGATGCTTTTGATTCCTTCTGATTTTTTTGGTTCTGGACAAATCAAACTGGATATTCGCGTTAAGTCATAA 924 0.4264 MVKISLGGYDDGEGPSNRIQKRHRIEPEDGQSSTTQKEQQHQGDSHLPKIAEHDESPARSVTDDKDRSISVTITDPDVLDCCICYEPLTAPVFQCENGHIACSNCCARLGNKCAMCSMPIGYNRCRAIEKVLESIKISCLNAKYGCKHMFCYSKKNEHEKECKFLPCLCPHSGCDFLASSEELSLHFRHRHIHSGIQFAYDKFFTVFLNIDHKTIVLQEKNDANLFLIHNNHELLGNLIHITCIGPKSRRGFHYDILARSQGSSLILQSYTKIVQGHSADAPSTGMLLIPSDFFGSGQIKLDIRVKS 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211485g00043 307 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 32 306 IPR044286 -
Stsc211485g00043 307 MobiDBLite consensus disorder prediction 15 31 - -
Stsc211485g00043 307 Pfam Seven in absentia protein family 124 224 IPR018121 GO:0005737|GO:0006511|GO:0007275
Stsc211485g00043 307 ProSiteProfiles Zinc finger SIAH-type profile. 134 192 IPR013010 GO:0008270
Stsc211485g00043 307 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 187 IPR013083 -
Stsc211485g00043 307 MobiDBLite consensus disorder prediction 1 67 - -
Stsc211485g00043 307 MobiDBLite consensus disorder prediction 42 67 - -
Stsc211485g00043 307 CDD RING-HC_SIAHs 79 117 - -
Stsc211485g00043 307 SUPERFAMILY TRAF domain-like 134 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211485g00043 Stsc-Chr211485 181178 182544 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211485g00043 77 305 C3H Transcription Factor Family AT2G41980 27.755 7.71e-22 91.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211485g00043 K04506 - gmx:100778869 429.098