Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc211485g00043 | ATGGTGAAGATCTCGCTTGGTGGATACGACGATGGGGAAGGACCTAGCAACCGCATCCAGAAGCGACACAGGATTGAACCAGAAGATGGCCAATCAAGCACAACCCAAAAGGAGCAGCAGCATCAAGGAGATAGCCACCTGCCTAAAATTGCAGAGCATGATGAAAGCCCTGCTCGATCTGTAACCGACGATAAGGATAGGTCCATTTCTGTCACCATCACCGACCCCGATGTCCTCGATTGCTGCATTTGCTATGAACCCTTGACCGCCCCTGTTTTCCAGTGTGAGAATGGTCACATTGCTTGTTCTAATTGCTGTGCCAGACTTGGCAACAAGTGTGCCATGTGCTCAATGCCTATTGGCTATAATCGCTGCAGAGCTATTGAGAAGGTTCTGGAATCTATTAAAATCTCATGCCTCAATGCAAAATATGGTTGTAAGCATATGTTTTGTTACAGTAAAAAAAATGAACACGAGAAGGAGTGTAAGTTTCTGCCATGTTTATGCCCCCACTCAGGGTGTGACTTTCTTGCTTCCTCTGAGGAGTTATCCCTCCACTTTAGACATAGGCATATACATTCTGGAATACAGTTTGCATATGATAAATTTTTCACTGTCTTCTTAAATATTGACCACAAAACAATTGTTCTTCAAGAGAAGAATGATGCTAATCTGTTTCTTATTCACAATAACCATGAGCTTCTAGGGAATTTAATCCATATAACTTGCATTGGCCCCAAATCCAGGAGAGGGTTTCATTATGATATATTGGCTAGGTCACAGGGAAGCTCTCTAATATTGCAATCTTATACCAAGATCGTTCAAGGTCACTCTGCTGATGCCCCTTCGACAGGGATGCTTTTGATTCCTTCTGATTTTTTTGGTTCTGGACAAATCAAACTGGATATTCGCGTTAAGTCATAA | 924 | 0.4264 | MVKISLGGYDDGEGPSNRIQKRHRIEPEDGQSSTTQKEQQHQGDSHLPKIAEHDESPARSVTDDKDRSISVTITDPDVLDCCICYEPLTAPVFQCENGHIACSNCCARLGNKCAMCSMPIGYNRCRAIEKVLESIKISCLNAKYGCKHMFCYSKKNEHEKECKFLPCLCPHSGCDFLASSEELSLHFRHRHIHSGIQFAYDKFFTVFLNIDHKTIVLQEKNDANLFLIHNNHELLGNLIHITCIGPKSRRGFHYDILARSQGSSLILQSYTKIVQGHSADAPSTGMLLIPSDFFGSGQIKLDIRVKS | 307 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc211485g00043 | 307 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 | 32 | 306 | IPR044286 | - | |
Stsc211485g00043 | 307 | MobiDBLite | consensus disorder prediction | 15 | 31 | - | - | |
Stsc211485g00043 | 307 | Pfam | Seven in absentia protein family | 124 | 224 | IPR018121 | GO:0005737|GO:0006511|GO:0007275 | |
Stsc211485g00043 | 307 | ProSiteProfiles | Zinc finger SIAH-type profile. | 134 | 192 | IPR013010 | GO:0008270 | |
Stsc211485g00043 | 307 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 129 | 187 | IPR013083 | - | |
Stsc211485g00043 | 307 | MobiDBLite | consensus disorder prediction | 1 | 67 | - | - | |
Stsc211485g00043 | 307 | MobiDBLite | consensus disorder prediction | 42 | 67 | - | - | |
Stsc211485g00043 | 307 | CDD | RING-HC_SIAHs | 79 | 117 | - | - | |
Stsc211485g00043 | 307 | SUPERFAMILY | TRAF domain-like | 134 | 305 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc211485g00043 | Stsc-Chr211485 | 181178 | 182544 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc211485g00043 | 77 | 305 | C3H Transcription Factor Family | AT2G41980 | 27.755 | 7.71e-22 | 91.7 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc211485g00043 | K04506 | - | gmx:100778869 | 429.098 |