Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211485g00028 ATGTCTGATGAAGCTAAACAACTTCTCTACCAAGACCTTATTGTAGATCATCATCAGAATATTAGTTCATCATCATCAGGAGGAGGAGGAGGAAGATTATTATTATCCAACAACATGTTCTGTGAGAAGCAGTTTGATCCATCTTCATACATGAGTTTCACTGAATGCCTTCAAGGAGGGATGGACTATAACTCCCTTGCAACTTCTTTCGGTTTGTCTCCTTCTTCATCCGAGGTCTTTTCATCCATCGAAGGCAATAGTAATCAAAAGCCCGAAGGAGTATTAGGAAGTGGTAGTGGTGGTGGTGGTGGAGGTAGCGAAACCCTTGGAACAACCCTGAACTCATCGATCTCTTCGTCATCATCTGAAGGCGGTGGCGAAGAAGATTCTGGAAAGAGCAACAAAGATAGCCAAGTGAAAGAAGAAGCTTCAGGAGAAACCTCCAAGAAAGGGAACAAGGAGAATAATAAGAAGAAAGGGGAGAAGAAGCAGAAGGAGCCAAGGTTTGCGTTCATGACGAAAAGCGAGGTCGATCATCTTGAAGATGGATACCGATGGAGAAAATACGGACAGAAAGCCGTTAAGAATAGCCCTTATCCAAGGAGCTACTACAGATGCACGACACAGAAGTGCAGTGTGAAGAAAAGGGTGGAGAGGTCATATCAAGATCCAAGCACAGTGATAACAACGTATGAAGGTCAACACAACCATCCAGTCCCCACTTCTTTGAGAGGGAATGCGGCTTCAATGTTCACACCTTCCATGCTTTCCATCTCAGCCCCCACTCCCCTCTCCGCCCCTACTCATCATCACGACCTCTTCGCTTCCCTCTCCTCCCACCACCACCACAACCATTCCGCCGGTCTCTTTACCCCCACCAATACTAACAACAATAATGCTGCTGGCTTATCGTCCTTGTTTTATCATCATCAGAGCATTAACAACAACAATAATAATAATAACTCATTTCTTCTCCATCATAATCAAAATAGTAATAGCAATCAGCAGCAGCTTCCTCCTGAATATGGCCTCCTTCAAGACATGCTGCTGCCTTCCATGTTCCTCAAACAAGAGCCTTGA 1080 0.4472 MSDEAKQLLYQDLIVDHHQNISSSSSGGGGGRLLLSNNMFCEKQFDPSSYMSFTECLQGGMDYNSLATSFGLSPSSSEVFSSIEGNSNQKPEGVLGSGSGGGGGGSETLGTTLNSSISSSSSEGGGEEDSGKSNKDSQVKEEASGETSKKGNKENNKKKGEKKQKEPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCSVKKRVERSYQDPSTVITTYEGQHNHPVPTSLRGNAASMFTPSMLSISAPTPLSAPTHHHDLFASLSSHHHHNHSAGLFTPTNTNNNNAAGLSSLFYHHQSINNNNNNNNSFLLHHNQNSNSNQQQLPPEYGLLQDMLLPSMFLKQEP 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211485g00028 359 Pfam WRKY DNA -binding domain 181 238 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc211485g00028 359 FunFam WRKY transcription factor 57 166 240 - -
Stsc211485g00028 359 MobiDBLite consensus disorder prediction 104 127 - -
Stsc211485g00028 359 SUPERFAMILY WRKY DNA-binding domain 172 240 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc211485g00028 359 ProSiteProfiles WRKY domain profile. 175 240 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc211485g00028 359 MobiDBLite consensus disorder prediction 128 170 - -
Stsc211485g00028 359 SMART WRKY_cls 180 239 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc211485g00028 359 MobiDBLite consensus disorder prediction 74 170 - -
Stsc211485g00028 359 Gene3D WRKY domain 164 241 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc211485g00028 359 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 101 314 IPR044810 GO:0003700
Stsc211485g00028 359 MobiDBLite consensus disorder prediction 74 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211485g00028 Stsc-Chr211485 138087 139879 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211485g00028 38 359 WRKY Transcription Factor Family AT4G18170 47.692 2.23e-72 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc211485g00028 WRKY 1.2e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211485g00028 - - gmx:100787050 320.857