Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211485g00027 ATGGAAAAGGAGCCTCTGCTCCCATATTTTAGCCCAAGAAAGAAGCCATCACCATCAGCAAATCCGCTTTGTCCATTGCCGGAACATGATGAGGTTCTTCTTCCTGCTTCCCCTGCTTGGATCAAAGACCGACTCATCTTTGGCCCTTCGCCTCTTGGTTCTTCCCCTAGCGATTCTTCACCATTGGTTGAGGCCTTGGCACTTTCACAACCACAACAATCTCCTTCTCCTTCTTGTTCTCCCTCTTCTTCACGGGACTTTGCATCAGCACTTCTTGAATCACAACAGTTTAACCAACAACAGCAACAGCAACAGCAACAATCTTCTTGGCTTATTGATCCTAATTATCCATGGCGAAGGTCCAATCTTCACCGCTCCAAAACTGCACCGGCTATGGCTGTGATCAGTGATTTCAGCAAGTGTAGTGCCCCCAAAAACAAAAAGCCACAATTTGGTAGCCAATCAATTGTTCACCAGGCTTTTCTCCTCCTTCTTCTTTATTTGTCATTAGGGGTAGTCATTTATTGGTTCAATCGTCATAGTTTTACAGTATCTGAGACTCATCCTGTAGTGGATGCATTATATTTCTGTATAGTTACAATGTGCACTATTGGATATGGAGACATCACTCCAAATAGTACCATAACCAAGCTTTTCGCTATATTCTTTGTGTTGATTGGATTTGGCTTTATAGACATATTGCTCAGTGGGATGGTTAGCTATGTACTTGATTTGCAGGAGAATCATTTGTTGAGGACAGTGAAGAGTAGGGGCGAAAAGGATGGGAGGTCTTATATAATTGATGTGAAGAAAGGGAGGATGAGGATTAGGATGAAGGTGGCACTGGCTGGACTAGTTGTGGTATCTTGTATTGGAGTTGGTGTGGCGGTTTTGCATTTTGTGGAGAGGCTCAGCTGGCTGGATTCCTTTTATCTTTCTGTTATGTCAGTTACAACTGTTGGCTATGNNNNNNNNNNCGATCACTCGTTCAGTACTATGCATGGTCGCATCTTCGCTGCGATTTGGTTGCTTGTGTCTACACTTGCGGTCGCCCGAGCATTCCTCTATTTGGCTGAAGCAAGAGTAGATAAGCGGCACAGGAAGATGGCAAAGTGGATTCTTGGTCAGGATATGACTGTTGCTGAGTTTCTTGCTGCAGATATGGACAATAATGGATTTGTGAGTAAATCTGAATATGTTATATACAAGCTCAAGGAGATGGGAAAAGTGTCAGAGAAGGACATCATGCAGATCGGTGAGAAGTTTGATAGACTGGATACTGGGAACTGCGGAAAAATAACACTTGCTGATCTAATGGATGGTCGACATTGA 1332 0.4332 MEKEPLLPYFSPRKKPSPSANPLCPLPEHDEVLLPASPAWIKDRLIFGPSPLGSSPSDSSPLVEALALSQPQQSPSPSCSPSSSRDFASALLESQQFNQQQQQQQQQSSWLIDPNYPWRRSNLHRSKTAPAMAVISDFSKCSAPKNKKPQFGSQSIVHQAFLLLLLYLSLGVVIYWFNRHSFTVSETHPVVDALYFCIVTMCTIGYGDITPNSTITKLFAIFFVLIGFGFIDILLSGMVSYVLDLQENHLLRTVKSRGEKDGRSYIIDVKKGRMRIRMKVALAGLVVVSCIGVGVAVLHFVERLSWLDSFYLSVMSVTTVGYXXXXDHSFSTMHGRIFAAIWLLVSTLAVARAFLYLAEARVDKRHRKMAKWILGQDMTVAEFLAADMDNNGFVSKSEYVIYKLKEMGKVSEKDIMQIGEKFDRLDTGNCGKITLADLMDGRH 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211485g00027 443 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 159 417 IPR003280 GO:0005267|GO:0016020|GO:0071805
Stsc211485g00027 443 Gene3D - 350 442 - -
Stsc211485g00027 443 Gene3D - 284 349 - -
Stsc211485g00027 443 MobiDBLite consensus disorder prediction 52 85 - -
Stsc211485g00027 443 MobiDBLite consensus disorder prediction 1 29 - -
Stsc211485g00027 443 Pfam Ion channel 285 358 IPR013099 -
Stsc211485g00027 443 Pfam Ion channel 163 242 IPR013099 -
Stsc211485g00027 443 SUPERFAMILY Voltage-gated potassium channels 154 242 - -
Stsc211485g00027 443 SUPERFAMILY EF-hand 379 439 IPR011992 -
Stsc211485g00027 443 FunFam Two-pore potassium channel 5 145 255 - -
Stsc211485g00027 443 MobiDBLite consensus disorder prediction 45 85 - -
Stsc211485g00027 443 FunFam Two-pore potassium channel 3 263 380 - -
Stsc211485g00027 443 SUPERFAMILY Voltage-gated potassium channels 270 380 - -
Stsc211485g00027 443 ProSitePatterns EF-hand calcium-binding domain. 387 399 IPR018247 -
Stsc211485g00027 443 Gene3D - 154 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211485g00027 Stsc-Chr211485 122079 126005 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211485g00027 4 441 Ion Channels AT4G18160 58.597 6.73e-169 479
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211485g00027 K05389 - gmx:100804249 627.476