Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211485g00012 ATGTTTTTCTTAGTTTCTGGTTTGCTAACCGATATCTTGACCAAGGTAGATTCTGCTACCTACAAAGAGATTTCACTGTTATGGGGTCTCAAAGATGAAATTGACACCCTTAAGAACTCTCTCAGATTCATCAATGCTTTCATCTTGGATGCTGAGAACAAGCAAACAGAAAGTAAGAGCATCATGGAGTGGCTGCAGCAGCTCAGGGATTGTTTCTTTGATGCTCGCGACATCTTGGATGAGATTGAGTGTGAAGCACTCAGGAACAAGGTTGTGAAGAGCCAAGGGAGCTTCAAAAGAAAGGTAAAGCACTTCTTCTCACTCTCTAACCCTCTAGCTTTTCGTATTCAGGTGGCTCATAAGATCAAGAAAATTAAGAAGAGAATAGATGAATTAGGTACTCTTAGGATGCAATTTGGTCTCTCAGAGATTCATGCAAGTAGTAGTAGTAGTAATGTTCATGTGCCAAAGTTGGCTTGGAGGGAGACTAAATCTTCTGTTAGGCCTTCCGATGTGATTGGTAGAGATGAGGAGAAAGACAAAATCATTGGTTTATTGATGGTTCCACCATCAGATTCTGGTAATGAGATTATTGATGTTATTCCAATTGTTGGAATTGGAGGCTTGGGGAAGACCACAATTGCACAACTAGTGTACAATGATGATAGGGTGGTCGAGAATTTCAAACTGCGAATGTGGGTGTTTGTTTCTGATGATTTTGATGTTAAGAGGTTGGCATTAGAGATTCTTAAGGCTATGAATGGAACAGATATAGATGCCCATCACAATTATAGTTATGATCAGTTACAGAATTTGTTGCGCGAGGGACTAGATAGCACGAAGTTTCTGCTTGTTCTTGATGATGTTTGGAATGAAGATTATAGAGCGTGGAGCGAGTTGAGAAATCTGTTAGTAGGAATGCATGATGATGGAAATAACGGAATTGGCAGCAAGATTATCGTGACAACTCGTAGCGAGAAGGTTGCTTCCATCATGGGGAAAGCTTATAAACTGCTATATCTTCCTGATGAAGATTGTCTGAAGCTATTTCTCAGGTGTGCATTTCCAGCAGGAGAGGGAAAGCAGTACCCTAGGCTTGTGGAAATTGGGAAGGAGATTGCTAGAAAGTGCAAAGGGTTGCCCCTGGCAGTGGTGAGTTTAGGGTGCATGCTTCGCTCAGAACTTCGAGAAAGTGTGTGGAAGAAAACTAGAGATAGTGAAATTTGGAAAACAGACCAACAAAAAGATGGGATTTTGGCTCCATTGAGACTGAGCTATAATCACTTGCCATCTGAATTGAAAAGGTGTTTCTCCTATTGTTCAGTTTTTCCAAAGGGTCATGAGTATAGCAATTTGGAGCTGATATCATTTTGGATGGCACATGGACTACTACAAACCAACAATGAAGATGAAGAGGCAGAAGATCTAGGAGAGTTCTACATTCAAGAGTTAGTTTCAAAATCTTTCTTCGAAGGTGTTCCCGAAGATCAAGTAGTTGTTGATGGCCTTATTTTTGAAGAACTTAAGCATCTAGGAATATCTTATTTTAAGATGCATGATCTTATTAATGACCTTGCTGTGTCTACTATGCAAAATGAAAGGGCTGCAGTAAGGTTTAATTCAACCAATGTGAGAGAAAATGTGCACCATTTATCATTTTCTGAGAGCAGAGAAGGAGTACCTAATTTTGGTAATAAAATGTTGAGTAAGGTCCAAACCATTGGATTCTGGCATGCAAGTGAAAGTGCAAGTGCAATCACTGGACCATTTCTTAGATGGGTTTCTAAGGAATTCAGGTACCTCAGGGTGTTGAATCTACAAGGTTCAAATTTTCAGTTCTTGCCTGATTGTTTCTACAAGATGAAGCATTTGAGGTATCTTAATCTGAGCTATTGCCAAAGGATGGAAAAACTGCCAGATTCCATTTGCAAGCTGCAGAATTTGGAAGTTCTTAATCTGTGTAGATGTGTAGCACTTAAATACATTCCCAAAAACTTGATGAACCTTGTGAGCCTTAGAATTTTGTGGATCACCACACAAGTGAATGATTTGTCTTATATAGGTTTTAAGACCTTCAGTTCTTTGCAAATCTTGATTTTGTGGAATTGTGAAAACTTAGCATTCCTTCCACATGATTTGGGGCACTTAACTGCTTTGAAAAGGCTTAGCATTGAGGCTTGTCTTGAAGTGACTCATTTTGGGGATGAAGGTGAACAAGAAATTGAAGAAGATTATTCCTTGAAACTTGAACAATTCTCAATCAACCAACTACCAGAATTGTTAGCATTACCTAATTGGCTACGAAGATGTTCCAAGACTCTCAGATATCTGGGCCTTTCACAGTGTCAGAGCTTAACAGCATTTCCAGAATGGTTGCCAGTTCTGACATCACTTGAAACCCTTCTAATTGCTGATTGTCCAAAATTAACACTACCACATAATATTGATAGTGTTCATAACCTTCAGAACTTGAAGATATTTGGATGCCCTCAGCTAGTTGAGAAATGCAAAAGAGATACAGGACCTGATTGGTGTAAAATATCTCATATCCCAAATGTTGAACTTGAAAGCGTTTAG 2577 0.3927 MFFLVSGLLTDILTKVDSATYKEISLLWGLKDEIDTLKNSLRFINAFILDAENKQTESKSIMEWLQQLRDCFFDARDILDEIECEALRNKVVKSQGSFKRKVKHFFSLSNPLAFRIQVAHKIKKIKKRIDELGTLRMQFGLSEIHASSSSSNVHVPKLAWRETKSSVRPSDVIGRDEEKDKIIGLLMVPPSDSGNEIIDVIPIVGIGGLGKTTIAQLVYNDDRVVENFKLRMWVFVSDDFDVKRLALEILKAMNGTDIDAHHNYSYDQLQNLLREGLDSTKFLLVLDDVWNEDYRAWSELRNLLVGMHDDGNNGIGSKIIVTTRSEKVASIMGKAYKLLYLPDEDCLKLFLRCAFPAGEGKQYPRLVEIGKEIARKCKGLPLAVVSLGCMLRSELRESVWKKTRDSEIWKTDQQKDGILAPLRLSYNHLPSELKRCFSYCSVFPKGHEYSNLELISFWMAHGLLQTNNEDEEAEDLGEFYIQELVSKSFFEGVPEDQVVVDGLIFEELKHLGISYFKMHDLINDLAVSTMQNERAAVRFNSTNVRENVHHLSFSESREGVPNFGNKMLSKVQTIGFWHASESASAITGPFLRWVSKEFRYLRVLNLQGSNFQFLPDCFYKMKHLRYLNLSYCQRMEKLPDSICKLQNLEVLNLCRCVALKYIPKNLMNLVSLRILWITTQVNDLSYIGFKTFSSLQILILWNCENLAFLPHDLGHLTALKRLSIEACLEVTHFGDEGEQEIEEDYSLKLEQFSINQLPELLALPNWLRRCSKTLRYLGLSQCQSLTAFPEWLPVLTSLETLLIADCPKLTLPHNIDSVHNLQNLKIFGCPQLVEKCKRDTGPDWCKISHIPNVELESV 858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211485g00012 858 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 160 440 IPR027417 -
Stsc211485g00012 858 Gene3D Ribonuclease Inhibitor 567 736 IPR032675 -
Stsc211485g00012 858 PANTHER DISEASE RESISTANCE PROTEIN RP 55 826 IPR044974 GO:0006952
Stsc211485g00012 858 SUPERFAMILY L domain-like 517 847 - -
Stsc211485g00012 858 Gene3D - 426 529 IPR036388 -
Stsc211485g00012 858 Gene3D - 159 339 IPR027417 -
Stsc211485g00012 858 Pfam NB-ARC domain 177 405 IPR002182 GO:0043531
Stsc211485g00012 858 Gene3D - 340 425 IPR042197 -
Stsc211485g00012 858 PRINTS Disease resistance protein signature 377 391 - -
Stsc211485g00012 858 PRINTS Disease resistance protein signature 276 290 - -
Stsc211485g00012 858 PRINTS Disease resistance protein signature 619 635 - -
Stsc211485g00012 858 PRINTS Disease resistance protein signature 200 215 - -
Stsc211485g00012 858 Gene3D Ribonuclease Inhibitor 746 840 IPR032675 -
Stsc211485g00012 858 Pfam Rx N-terminal domain 10 97 IPR041118 -
Stsc211485g00012 858 Gene3D - 9 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211485g00012 Stsc-Chr211485 36590 39569 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211485g00012 198 832 WRKY Transcription Factor Family AT5G45050 22.048 3.03e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211485g00012 - - mtr:25493373 1170.99