Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211485g00009 ATGCTGAGTTTGTACTGGAATGATTTAAGAGGAATCATTCCAACTACAATTAAAGGTTTGCAGTCTCTTCAATATTTGAGTGTTGGCAACAATCATCTGCAGGGAACCATCATCAGCGAAATCTGCGAAATCAAGCAGCTGAGTGAGTTGTACATAACTCAGAACAAGCTAATTTCTGGAGAGGTTCCAACATGCTTCGATAATCTTACTTCTCTAAGAAAACTTTACTTGAACTCCAACAATCTCAATAAAGTGCCTTCTTCTCTTTGGAGCCTCAAAGACATTCTTGAAGTAAACTTATCTGACAATGCTTTAACTCTGTCTCTTCCAATTGAAATTGGGAACTTAAAGGCTGTGACATTCTTGGATCTATCAAAGAATATGATCTCAGGAAGCATTCCTAGGGACGTTTCCGGATTGCAAAACTTGCAAATTCTCAACTTCTCACAAAATAAATTGGCAGGGGATATTCCTGACTCACTTGGCAGTTTGATGAGTTTGAAAGATTTGGACTTGTCCCAAAACAACTTGTTTGGCTTGATTCCAAGATCATTGGAGTCACTTCATTATCTTGAATCCATCAATCTTTCTCACAATAATTTGGAAGGTGAGATTCCGAATGGTGGACCTTTCAAAACTTTCACTGCTCAATCTTTCATGTTTAATAAAGCACTTTGTGGAAATGCTAGGCTACAAGTCCCACCATGCAGTAAAGAAAAGAAGAAAAGGTCAAATGCAAACATATTCTTCATCAAATGCATATTGCCTATAATGGTTTCAATTATTTTGGTTGTTTTCTGTGTGTTTTTTCTAGTAAGGCGTCAAAGAAAGAAGGGTGGTGATATTAATGAAGGAACATTATCAGTGTTACCAGCAAGAAGAATGATCTCCTACTATGAACTATCACAGGCAACTAATGGATTTGATGAGAGTAATTTACTTGGTAAGGGAAGTTTTGGTTCTGTGTTCAAAGGTTTACTTTCAAATGGGATGGTGGTTGCAGTCAAAGTGTTTAACTTGGACTTGGAATTAGGATCAAAAAGCTTCAGTGTAGAATGCGAAGCAATGCGCAATCTGCGTCATCGAAATCTCATCAAGGTCATAGATTGTTGTTCAAGTATAGATTACAAGCTTTTAGTGATGGAGTTCATGCCTAATGGGAGCCTTGAGAGATGGTTGTATTCTCATAACTATTGTTTGGACTTCTTGCAAAGGCTAAATATAATGATAGATGTGGCATCTGCATTGGAGTATCTGCATCATGGAGCTTCACCTAAAGTGGTTCATTGTGATGTAAAACCTTCTAATGTCTTATTGGATGAAGACATGGTTGCCCATGTCAGTGACTTTGGCATTGCTAAACTGCTTGACGAGGGACAATCCAAAGAATATACCAAGACCATGGCTACAGTTGGCTACATTGCACCGGAGTTTGGATCCAAAGGGATTATCTCTACAAAGGGAGATGTATACAGTTTTGGGATAATGCTGATGGAAACATTCACAAGAAAGAAGCCAACAGATGACTTGTTTGTTGCAGGATTAAGCATGAAAGGTTGGGTTAGTGAATCATTACCTCATGCAATTGATCGAGTTGCAGATTCCAACTTGTTACAAGATGAAGGTCACCATGTTGATGACATAATAGCATCTACATCATCTATTTTGAAACTGGCCTTGAATTGTTGTGAGGATTTACCTGAAGAACGAATCAATATGACAGATATTGCTACATCATTGAACCAAATTAAGGCCGTGTTTCTTAGAGCTAGTGACAAGGATGTCATGCGGTTTTATAGAAAATGA 1806 0.3798 MLSLYWNDLRGIIPTTIKGLQSLQYLSVGNNHLQGTIISEICEIKQLSELYITQNKLISGEVPTCFDNLTSLRKLYLNSNNLNKVPSSLWSLKDILEVNLSDNALTLSLPIEIGNLKAVTFLDLSKNMISGSIPRDVSGLQNLQILNFSQNKLAGDIPDSLGSLMSLKDLDLSQNNLFGLIPRSLESLHYLESINLSHNNLEGEIPNGGPFKTFTAQSFMFNKALCGNARLQVPPCSKEKKKRSNANIFFIKCILPIMVSIILVVFCVFFLVRRQRKKGGDINEGTLSVLPARRMISYYELSQATNGFDESNLLGKGSFGSVFKGLLSNGMVVAVKVFNLDLELGSKSFSVECEAMRNLRHRNLIKVIDCCSSIDYKLLVMEFMPNGSLERWLYSHNYCLDFLQRLNIMIDVASALEYLHHGASPKVVHCDVKPSNVLLDEDMVAHVSDFGIAKLLDEGQSKEYTKTMATVGYIAPEFGSKGIISTKGDVYSFGIMLMETFTRKKPTDDLFVAGLSMKGWVSESLPHAIDRVADSNLLQDEGHHVDDIIASTSSILKLALNCCEDLPEERINMTDIATSLNQIKAVFLRASDKDVMRFYRK 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211485g00009 601 Gene3D Phosphorylase Kinase; domain 1 291 383 - -
Stsc211485g00009 601 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 384 593 - -
Stsc211485g00009 601 FunFam Serine-threonine protein kinase plant-type 289 383 - -
Stsc211485g00009 601 SMART LRR_typ_2 20 44 IPR003591 -
Stsc211485g00009 601 SMART LRR_typ_2 69 92 IPR003591 -
Stsc211485g00009 601 SMART LRR_typ_2 164 187 IPR003591 -
Stsc211485g00009 601 SMART LRR_typ_2 188 212 IPR003591 -
Stsc211485g00009 601 SMART LRR_typ_2 116 140 IPR003591 -
Stsc211485g00009 601 ProSiteProfiles Protein kinase domain profile. 308 588 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211485g00009 601 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 38 133 - -
Stsc211485g00009 601 Gene3D Ribonuclease Inhibitor 1 245 IPR032675 -
Stsc211485g00009 601 FunFam Leucine-rich repeat receptor-like protein kinase 142 237 - -
Stsc211485g00009 601 ProSitePatterns Protein kinases ATP-binding region signature. 314 336 IPR017441 GO:0005524
Stsc211485g00009 601 Pfam Protein kinase domain 309 577 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211485g00009 601 ProSiteProfiles Leucine-rich repeat profile. 71 93 IPR001611 GO:0005515
Stsc211485g00009 601 SUPERFAMILY L domain-like 2 227 - -
Stsc211485g00009 601 PANTHER OS04G0122200 PROTEIN 2 585 - -
Stsc211485g00009 601 Pfam Leucine rich repeat 142 201 IPR001611 GO:0005515
Stsc211485g00009 601 Pfam Leucine rich repeat 46 105 IPR001611 GO:0005515
Stsc211485g00009 601 SUPERFAMILY Protein kinase-like (PK-like) 290 580 IPR011009 -
Stsc211485g00009 601 SMART LRR_sd22_2 20 43 - -
Stsc211485g00009 601 SMART LRR_sd22_2 164 190 - -
Stsc211485g00009 601 SMART LRR_sd22_2 116 142 - -
Stsc211485g00009 601 SMART LRR_sd22_2 44 71 - -
Stsc211485g00009 601 Gene3D Transferase(Phosphotransferase) domain 1 384 596 - -
Stsc211485g00009 601 SMART serkin_6 308 587 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211485g00009 601 ProSitePatterns Serine/Threonine protein kinases active-site signature. 427 439 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211485g00009 Stsc-Chr211485 29684 31996 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211485g00009 9 591 Receptor kinase-like Gene Family AT3G47570 37.697 1.85e-125 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Stsc211485g00009 Pkinase 4.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211485g00009 - K13420 aip:107627939 889.412