Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211484g00029 ATGGCGAAAACATACGAGGGACGTGCTGTAGGAATCGATCTTGGCACCACTTACTCATGTGTTGGTGTGTGGCAGGAAGAACACCAAAGAGTGGAGATCATCCACAATGATCAAGGCAATAGAACAACACCTTCTTCTGTTGCTTTCACCAATAACCATAGGTTGATTGGTGATGCTGCTAAGAATCAAGCTGCTTCCAATCCAACTAACACTGTCTTTGATGCGAAAAGGTTGATTGGCAGAAAATACAGTGACTCCATTGTCAAGAATGACATGATGCTGTGGCCATTTAAAGTCATTCCTGGCGATGATGACAAACCAATGATTTCTGTTACATATAAGGCTCAGGAGAAGCATCTTTCTGCTGAAGAAGTTTCATCGATGGTTCTAACTAAAATGCGGGAGATTGCAGAGGCTTATTTGGAAGCTCCCGTCAATAACGCAGTAATCACTGTCCCTGCTTATTTCAATGACTGTCAACGCAAAGCCACAAAAGATGCTGGTGCCATTGCAGGCCTCAATGTCATGAGAATCATTAACGAGCCTACAGCTGCTGCAATTGCATATGGTTTGGACAAGGTAGCTAATTGTTCTGTAGAACGGAATATTTTAATCTTTGACCTCGGCGGTGGTACTTTTGATGTGTCTCTACTTACTATTAAGGATAAGGTCTTTGAAGTTAAGGCCACTGCAGGGAATACTCACCTTGGTGGAGAAGACTTTGATAACAGAATGGTGAATTACTTTGTACAAGAGTTCAGAAAGAAGAACAAAGTGGATATCAGTGGGAACCCGAAAGCCTTGAGAAGGTTGAGAAGTGCATGTGAAAGGGCAAAAAGGACACTCTCATTTGCTTTTGATACTGTCATTGAACTTGATGCTTTACATCAAGGGATTGACCTTTACACATCACTCAGCCGTGCCAAGTTTGAAGAACTAAACATGGAGCTATTTAGAGAGTGTATGGATATAGTAGAAAGCTGTCTCTTTGATGCTAACATGGACAGGTCATGTATACATGACATTGTCCTTGTTGGCGGCTCTTCTAGGATTCCCAAAGTGCAGCAGCTTCTGCAGGAATTCTTCAGAGGGAAGGATCTTTGCAAGAGTATCAACCCGGATGAAGCTGTTGCTTATGGAGCTGCAGTTCAGGCTGCTTTACTGAGTGAAGATGTCAAGAAAGCACCGGAGCTTGTTCTGTTGGATGTTACTCCCTTATCACTTGGTATAGGATTAATGCGAGACCGAATGAATGTGGTGATTCCTAGGAATACTAGCATACCTGCAAGGAGGACAAGAGCATACACAGCTAAAGATAACCTAACCAGTGTTGCTATTTATGTTTATGAGGGTGAGAGGACAAGATCAAGTGATAACAACTTGTTGGGTTGTTTTAGTCTTGATCTCCCTCGTGAATCTTGTCAGCCTCTTTTGTTTGTATGCTTTGATTTAGATGCTGATGGGATTCTGAATGTATCTGCATGGGAAGAAACCAATGGTTGTAGGAATGAAATCAGAATAACCAATGACAAAGAAAGACTTTCGGCCGAGGAGATTCGAAGATTGATTGAGGAAGCTGACATGTACAAGGTTGAAGATGCAGAGTTCCTTGAGAAGGCTAGTGCAATGAGTGCTTTGGATACTTATGTTTACAATATGGAAAAAGTTCTAAGAGATGAAGACATGAGGTCTAAGCTTTGTCCTTTGGAGAAGGAGGAGATCTATTTGGCAATTGACAAGGCCAGAAATCTCCTTGATGGTGATATCCAGCGGCGAGAAACAGATTGGTTTGTGAATTGTCTAAAGGAGGTTAAGGGCATCTTTGAACCCATTATAGCTAAGACTAAATAG 1851 0.4198 MAKTYEGRAVGIDLGTTYSCVGVWQEEHQRVEIIHNDQGNRTTPSSVAFTNNHRLIGDAAKNQAASNPTNTVFDAKRLIGRKYSDSIVKNDMMLWPFKVIPGDDDKPMISVTYKAQEKHLSAEEVSSMVLTKMREIAEAYLEAPVNNAVITVPAYFNDCQRKATKDAGAIAGLNVMRIINEPTAAAIAYGLDKVANCSVERNILIFDLGGGTFDVSLLTIKDKVFEVKATAGNTHLGGEDFDNRMVNYFVQEFRKKNKVDISGNPKALRRLRSACERAKRTLSFAFDTVIELDALHQGIDLYTSLSRAKFEELNMELFRECMDIVESCLFDANMDRSCIHDIVLVGGSSRIPKVQQLLQEFFRGKDLCKSINPDEAVAYGAAVQAALLSEDVKKAPELVLLDVTPLSLGIGLMRDRMNVVIPRNTSIPARRTRAYTAKDNLTSVAIYVYEGERTRSSDNNLLGCFSLDLPRESCQPLLFVCFDLDADGILNVSAWEETNGCRNEIRITNDKERLSAEEIRRLIEEADMYKVEDAEFLEKASAMSALDTYVYNMEKVLRDEDMRSKLCPLEKEEIYLAIDKARNLLDGDIQRRETDWFVNCLKEVKGIFEPIIAKTK 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211484g00029 616 Gene3D - 544 616 IPR029048 -
Stsc211484g00029 616 ProSitePatterns Heat shock hsp70 proteins family signature 2. 205 218 IPR018181 -
Stsc211484g00029 616 Gene3D Actin; Chain A, domain 4 237 320 - -
Stsc211484g00029 616 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 395 543 IPR029047 -
Stsc211484g00029 616 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Stsc211484g00029 616 Gene3D - 73 128 - -
Stsc211484g00029 616 Gene3D - 10 386 - -
Stsc211484g00029 616 PRINTS 70kDa heat shock protein signature 8 21 - -
Stsc211484g00029 616 PRINTS 70kDa heat shock protein signature 371 391 - -
Stsc211484g00029 616 PRINTS 70kDa heat shock protein signature 60 68 - -
Stsc211484g00029 616 PRINTS 70kDa heat shock protein signature 148 168 - -
Stsc211484g00029 616 PRINTS 70kDa heat shock protein signature 475 491 - -
Stsc211484g00029 616 PRINTS 70kDa heat shock protein signature 397 416 - -
Stsc211484g00029 616 PRINTS 70kDa heat shock protein signature 339 355 - -
Stsc211484g00029 616 PRINTS 70kDa heat shock protein signature 38 50 - -
Stsc211484g00029 616 PRINTS 70kDa heat shock protein signature 211 221 - -
Stsc211484g00029 616 FunFam heat shock 70 kDa protein-like 73 128 - -
Stsc211484g00029 616 SUPERFAMILY Actin-like ATPase domain 200 389 IPR043129 -
Stsc211484g00029 616 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 393 543 IPR029047 -
Stsc211484g00029 616 FunFam Heat shock protein 70 10 202 - -
Stsc211484g00029 616 SUPERFAMILY Actin-like ATPase domain 9 193 IPR043129 -
Stsc211484g00029 616 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 543 615 IPR029048 -
Stsc211484g00029 616 ProSitePatterns Heat shock hsp70 proteins family signature 3. 342 356 IPR018181 -
Stsc211484g00029 616 Pfam Hsp70 protein 9 612 IPR013126 GO:0005524|GO:0140662
Stsc211484g00029 616 Gene3D - 194 368 - -
Stsc211484g00029 616 PANTHER HEAT SHOCK PROTEIN 70KDA 9 570 IPR013126 GO:0005524|GO:0140662
Stsc211484g00029 616 FunFam Heat shock 70 kDa 237 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211484g00029 Stsc-Chr211484 150536 152456 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211484g00029 1 614 Calmodulin-binding Proteins AT3G12580 65.534 0.0 814
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211484g00029 K03283 - gmx:102667572 841.262