Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211484g00020 ATGCGCAATCGCAACATTCCCCCATCCATGGACCTCGACTTGGAAGCCACAGGCTTCGAATCCGAAGACGAAGGAGAAGAAGAAGAAGAAGACGACGATGAATATGACGAACAACAACAACATCCCCAAACCTATCACATTATCAACATTCCTTCTTCCTCCCACGCAAACCCTAACAACAACACTGAGCCCTACCTCGGCATGGAGTTCGACTCCGAGCTCTCGGCACGCGCCTTCTACAACGCCTACGCGCGTCGTATTGGCTTCAGCACCCGCGTCAGCGTTTGTCTCCGCTCCCGCAAGGATTCCTCCGTCATCCGCCGCCGCGTCGTCTGCTCCCGCGAGGGCTTCCGCCGCAACCCTGAGAATCACGATCCCAAGCGCCACCGCTCCGTCACTCGCGTCGGCTGCAAGGCTCAGATCACAGTCAAGAAGAGAGGAGGCCCGCTCGGGAAGTGGTACATCTCCAAGTTCATCAAGGACCATAACCACGAACTCGTCCCTCCTGATAGGGTCCACAACCTCCGCTCCCACCGCCGCGTCAATGGCGCCGCTCGCAGCCTCATCGACACTCTTCACGCCGCCGGCATGGGAGCTGCCGAGGTTATGACTGTGCTCATCAAGGAGTCCGGTGGAATCGACAACGTAGGCTTCACGAAAGTAGACTGCCAGAACTACATGACGTCATCTTCCAAGAGGAGCCTCGGGAGTGGGAGCCAGCTTGTCTTTGATTTCTTGAAGAAGATGAGCGAGGAGGATCCTTCTGGATTCTTCTACTCCTTCCAAGGCGATTCGGAGAGTTCCTCAGATACTCGTCACCGGTTCTCCAAGTGGGATGTGTTTGGTGAGGTTCAGGAGAGGCTGATCGATGTGAGTGGAGTGCATCCTGAGTTTGAGTCTGAGTTACGACGGTGTGTGAACTTGGCCGAGACAGTTGATGAGTTTGAGTCTAGCTGGAAGTCCCTTGTTGGGAGGTATGAGCTTCTGGATAATGAATGGCTTCAGTTGATGTATAGGAATCGCCATCAATGGGTGCCGGTTTATCTCCGCGACACGTTTTTTGGCGATTTGTCTGCCATCCATGGGAGTGATACTAGCAACTCGTACTTTGATGGGTTTATAACTCCAACGACTACCGTTCAGACGCTGATTAAGCAGTATGAGAAAGGAATCGCGTATCGATATGAGATGGAAGTGAAGGAGGATTATGATACGCTGAACACTGCGCCGGATTTGAGGACTCCTTCTCCAATGGAAAAACAAGCCGCTGGTCTCTACACGAGGAAAATATTTGCAAGGTTCCAAGAGGAATTGGTTGAGACCCTTGCATATGCTGCTACGTTGCTGGATGATGCAAGATCACAAGCTACTTATCGGGTGGCAAAGTACGGAGAGGAGAACAGGGCGCATTTTGTTAGGTTCAATGTCTTCAGGAAGAAAGCTAGTTGCAGCTGCCAGATGTTTGAGTTTGCGGGTCTTGTCTGTAGGCACATACTAGCAGTTTTTAGGGTCATCAATGTTCTTACGCTTCCGTCCCATTACATCTTGAAACGGTGGACGAGAAATGCAAAGAGTATCTTGTTGGATAAAGGAGCTCGTGAATTGCAAAATAGTGTGGAAGAGTCTTACTCTGCTCGCTACGATAGTTTGAGCCGGGAAGTTATGAGTTATGTAGAAATGGGGTCAGAATCAGTGGATATTTATGACGTTGCGCGGGATGCTCTTCGTGAGGCTGCAAAGAAGGTTGCAGATGCAAAGAAACCTCGTCCAGCACCTGTGCAAAGTACTTCAGATAATAATGAAAACCATGAGAGTAGTCAATCTTGTGATACAGATCAGGATAAGAAAATTCAAGAGTTGACTACTGAGTTAGAAGGTGCTCGGCAGCGATGTGAATCGTATCGGCAAAACCTATTTGGCTTACTAAAAAATATGGAGGAGCAGAAGTTAAAAATATCTGTTAAGGCTCAGAGTGTTAGGCTAAATCTAGGAAATGAATTGGTAGCTGAAGAAAGTAAGTAG 2022 0.4946 MRNRNIPPSMDLDLEATGFESEDEGEEEEEDDDEYDEQQQHPQTYHIINIPSSSHANPNNNTEPYLGMEFDSELSARAFYNAYARRIGFSTRVSVCLRSRKDSSVIRRRVVCSREGFRRNPENHDPKRHRSVTRVGCKAQITVKKRGGPLGKWYISKFIKDHNHELVPPDRVHNLRSHRRVNGAARSLIDTLHAAGMGAAEVMTVLIKESGGIDNVGFTKVDCQNYMTSSSKRSLGSGSQLVFDFLKKMSEEDPSGFFYSFQGDSESSSDTRHRFSKWDVFGEVQERLIDVSGVHPEFESELRRCVNLAETVDEFESSWKSLVGRYELLDNEWLQLMYRNRHQWVPVYLRDTFFGDLSAIHGSDTSNSYFDGFITPTTTVQTLIKQYEKGIAYRYEMEVKEDYDTLNTAPDLRTPSPMEKQAAGLYTRKIFARFQEELVETLAYAATLLDDARSQATYRVAKYGEENRAHFVRFNVFRKKASCSCQMFEFAGLVCRHILAVFRVINVLTLPSHYILKRWTRNAKSILLDKGARELQNSVEESYSARYDSLSREVMSYVEMGSESVDIYDVARDALREAAKKVADAKKPRPAPVQSTSDNNENHESSQSCDTDQDKKIQELTTELEGARQRCESYRQNLFGLLKNMEEQKLKISVKAQSVRLNLGNELVAEESK 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211484g00020 673 MobiDBLite consensus disorder prediction 581 615 - -
Stsc211484g00020 673 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 56 584 IPR031052 GO:0006355
Stsc211484g00020 673 ProSiteProfiles Zinc finger SWIM-type profile. 474 506 IPR007527 GO:0008270
Stsc211484g00020 673 Coils Coil 617 637 - -
Stsc211484g00020 673 SMART 26again6 481 508 IPR006564 GO:0008270
Stsc211484g00020 673 Pfam SWIM zinc finger 480 505 IPR007527 GO:0008270
Stsc211484g00020 673 MobiDBLite consensus disorder prediction 16 37 - -
Stsc211484g00020 673 Pfam FAR1 DNA-binding domain 79 168 IPR004330 -
Stsc211484g00020 673 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211484g00020 Stsc-Chr211484 115235 118833 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Stsc211484g00020 FAR1 2.5e-28 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211484g00020 - - cave:132190504 517.309