Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211484g00001 ATGGCTGCTACTTCATCATCATCAACACCGTTCTTCGAAATCAGACATCAGAATCACGAGAATCTGCAGATTTCACAGCAGCAGCAGAAGCTTCTTCAATCATCCACCACAACAACCGCTGCACCACCACCACCGCCACCACTCCCTCAAAAGAAAAGAAGGAACCACGCTGGAGGAACACCATATCCAGATGCGGAGGTGATAGCGCTGTCACCGAAGACGCTAATGGCGACAAACAGGTTCATATGTGAAGTTTGCAACAAAGGATTCCAAAGAGAACAGAACTTGCAGCTCCACAGAAGAGGACACAACCTTCCATGGAAGCTCAAGCAGAAGAACCCTAACAAAGAGCCTAAAAGAAAGGTCTATCTCTGCCCTGAGCCTACATGCGTCCACCACCACCCTTCAAGGGCCCTCGGCGACCTCACCGGCATCAAGAAACACTTCTCTCGCAAGCACGGCGAGAAGAAGTGGAAGTGCCACAAGTGTTCTAAGAAGTACGCTGTCCAGTCCGACTGGAAGGCGCACTCCAAGACCTGTGGTACCAAAGAGTACAGGTGCGACTGCGGCACCCTCTTCTCCAGGCGTGACAGTTTCATAACACACAGAGCCTTCTGTGATGCATTAGCACATGAAAGTGCATCAAGACACCCTCCAAATAACCTCAACCCTTTCGGAACTCTCTATTCCACAAACAACAACAACATCTTGAGCCTTGGAAATACAAATACTACTACTTCCACTTTCATTCCCACTCCACCCAAATTTGAGCACTTAATTTCATCACCACCACCACCACCATCACCATTCAATAACAACAACAACAATCACCATCATCATCACCAATCTTCATTATTATTTTCACATCACTCATCACCATCACCATCACCTTTTTTCATGGAAGGATATCATCATCAAGAACTTCAGCAACACCAACACCAACAAGAGCCCTTATTATTCTCATCTAACAACAACAACAACATGAACATGTTCAACCTCAGTTTCTTCCCAACCAACAACAACAACAATCATCATCGTCAGCAAGTTGTTGGGTCAGGTTTTTCTTCTCCATCATCTTCAATCTTTGGCAATAATTCATCATCACTGCAACTGCAACAACAAGAGAATAACAACAACAATTCTCCACATATGTCTGCAACTGCATTGCTGCAGAAAGCTACACAAATGGGTTCAACAACTTCAATAACCACCAACAACAACAACACAAGTAGCAGCAGTGCTTCCTCTCTGCTAAGATCAGCAATGGCCAATAATGATGATCAAAACGACAATCTCAGAGGATTGATGAACTCTCTGGTGGAAAATGAAAACATATTTGGCAACAATGTGAAAGGGAATAATAATCTTGGTGGTGTGTGCTTTGGAGGAGGATCTGATGATGATAATAAGTTGACTTTAGATTTTCTTGGTGTTGGAGGAGTCATCAGAAACATCACTGGAATCACTTCTTTCAACCCTAATAAACCCTTTGGAAGCTCAACAATGCAATGA 1512 0.4405 MAATSSSSTPFFEIRHQNHENLQISQQQQKLLQSSTTTTAAPPPPPPLPQKKRRNHAGGTPYPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKNPNKEPKRKVYLCPEPTCVHHHPSRALGDLTGIKKHFSRKHGEKKWKCHKCSKKYAVQSDWKAHSKTCGTKEYRCDCGTLFSRRDSFITHRAFCDALAHESASRHPPNNLNPFGTLYSTNNNNILSLGNTNTTTSTFIPTPPKFEHLISSPPPPPSPFNNNNNNHHHHHQSSLLFSHHSSPSPSPFFMEGYHHQELQQHQHQQEPLLFSSNNNNNMNMFNLSFFPTNNNNNHHRQQVVGSGFSSPSSSIFGNNSSSLQLQQQENNNNNSPHMSATALLQKATQMGSTTSITTNNNNTSSSSASSLLRSAMANNDDQNDNLRGLMNSLVENENIFGNNVKGNNNLGGVCFGGGSDDDNKLTLDFLGVGGVIRNITGITSFNPNKPFGSSTMQ 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211484g00001 503 Gene3D Classic Zinc Finger 64 127 - -
Stsc211484g00001 503 SUPERFAMILY beta-beta-alpha zinc fingers 80 178 IPR036236 -
Stsc211484g00001 503 MobiDBLite consensus disorder prediction 1 64 - -
Stsc211484g00001 503 MobiDBLite consensus disorder prediction 272 295 - -
Stsc211484g00001 503 FunFam protein indeterminate-domain 12-like 60 129 - -
Stsc211484g00001 503 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 25 486 IPR031140 -
Stsc211484g00001 503 MobiDBLite consensus disorder prediction 342 416 - -
Stsc211484g00001 503 FunFam protein indeterminate-domain 5, chloroplastic-like 136 215 - -
Stsc211484g00001 503 ProSiteProfiles Zinc finger C2H2 type domain profile. 81 103 IPR013087 -
Stsc211484g00001 503 MobiDBLite consensus disorder prediction 1 38 - -
Stsc211484g00001 503 ProSitePatterns Zinc finger C2H2 type domain signature. 83 103 IPR013087 -
Stsc211484g00001 503 Pfam Zinc-finger double-stranded RNA-binding 81 103 IPR022755 -
Stsc211484g00001 503 MobiDBLite consensus disorder prediction 258 298 - -
Stsc211484g00001 503 SMART c2h2final6 158 178 IPR013087 -
Stsc211484g00001 503 SMART c2h2final6 81 103 IPR013087 -
Stsc211484g00001 503 SMART c2h2final6 123 153 IPR013087 -
Stsc211484g00001 503 Gene3D Classic Zinc Finger 132 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211484g00001 Stsc-Chr211484 638 4514 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211484g00001 76 485 C2H2 Transcription Factor Family AT2G02080 46.000 1.50e-108 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc211484g00001 zf-C2H2_jaz 3e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211484g00001 K25870 - gmx:102663407 408.683