LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc211483g00033	ATGCATTTTTCCTCTTCACATTATTGTAAAATGCATGTCTTTGGATGCCTCCTCATTTTGTTGTCCCTCTTCATCATCCTCTCACCCTCTCATGCTCTTTCTAGAGATGAAGCCTCATTCATTGCACGTCGCCAATTGTTAACTCTTGAAGAGAACGCTGATTTACCTGACAATTATGTAGAAAATTACCAAATTAACCTTACCTTCGATAATCTTAGGCTCAAAGGTGCCTACATTGCCCTTGAAGCATGGAAACATGCCATCTATTCGGACCCATCAAACTTCACATCTAATTGGGTTGGCCCTGATGTTTGTTCTTACAATGGAGTCTATTGTGCTCCACCTCCTGATAATTCTTCAATTCAGGTTGTGGCTGGAATTGATCTTAACCATGCAGATATTGCCGGATACATTCCTACCGAGATTGGTTTGTTAACTGATCTTGCACTTTTACACATCAACTCTAACAGATTCTGTGGCATTCTCCCAAAGAGTTTCTCCAAGTTGAAGCTCTTGTATGAGCTTGACATCAGCAACAACCGCTTTGTAGGTCCATTCCCAAGCCATGTTCTCTCCATCTCTGATCTCCATTACCTTGACATCAGGTTCAATGACTTCGAAGGCGAGTTGCCTTCGGAGGTTTTCAACACGACACTAGATGCGATCTTCATGAACAATAACAGGTTCACATCCAATATCCCGGAGAGCATCGGAGGCTCTTCGGCCTCTGTGATTGTTCTGGCCAATAACCACTTCCAGGGATGCATCCCTGGAAGCATTGGCCAGATGAGAAATAAACTCAATGAGTTTGTTGTGACGAACAACAATCTCACGGGTTGCTTGCCTGGGGAGATTGGAAAGCTTAGCGAGGTTGAGGTGCTTGACATTAGTGACAACAATTTTGTTGGTGTGTTGCCAAGGACATTGACGGGATTGAAGGAAGTGCAGGTGTTGTCGATTGCGGATAACAAGCTTACAGGCTTTGTGCCAAAGAGCGTGTGTGAGTTGGGGAACTTGAAGAACTTCACATTCTCTAAGAACTACTTTAACGGTGAGGAAGAGGGTTGTGTGCCTAAAACAAGAAAGGGGGTGAAGATGGACGATCAAAATAACTGTATACCAGAAAGGCCAAAACAGAGGGATGGAAATTCTTGCAATGTTGTGATAAGCAAGCCTGTTGATTGCAGCAAGGCGCAGTGCAACAGTGGCGGCGGTGGCGGCGGTGAGAAGCCAGCGCCAAAAACACCATCGTCACGATCATCACCATCATCAAATAATACTCCAAAACCTTCAAAGGAGAAACAAACTCCCTCCTCACCTAGCAACAAAAGACAGAAGCCAAAACCGTCGTCGCCAAAACCAACACCTCCGACTGATAAGCCAACTCCGGCGTCGCCAAAGCCAACTCCAACACCAACACCTCAGACTCCGAAAACGTCGAATCCAAAACCAGAGAAAGCACCACCTAAGAATGATGATTATGATGATCATTATGAAGCACCTAAAGAAAGAAATAGGCCTCCAAAATCTCCACCTCCATCTCAATCTCAATCTCCAGCACCGGTAGTACAATCTCCTCCTCCTACACCAGTCTACTCTCCACCACCACCACCGCTTCAATCTCCATCACCTGCACCTGCACCAGTAGTTCATTCTCCACCACCACCACCAGTTTACTCCCCACCACCACCCGTCAACTCTCCGCCTCCATCAGTTCAGTCTCCACCACCACCTATCTACTCTCCTCCTCCACCGGTATACTCTCCGCCACCAACACCTACCAACTCTCCTCCTCCACCTGTCTACTCTCCACCGCCAACACCTACCTACTCTCCTCCACCGCCAGTCTACTCTCCACCACCAACTCCTATCTACTCTCCTCCACCGCCAGTCTACTCTCCACCACCAACTCCTATCTACTCTCCTCCACCGCCAGTCTACTCTCCGCCACCAACACCTATGTACTCTCCACCACCCCCGCCAGTCTACTCTCCACCACCAAACTCACCGCCGCCACCTGTCCAATCTCCTCCTCCGCCGGTTCAATCCCCACCACCACCAGTCCTCTCTCCTCCACCACCAGTTAACTCTCCTCCTCCACCGGTAAACTCTCCCCCACCACCGGTCTACTCTCCTCCGCCACTCGTCAACTCGCCTCCTCCTCCTCCGCCTGTTGTTTCTGCACCACCACCACAAGATGATGAAGATATGGTTCTTCCACCTGACTTCGGTTCATCATATGCTTCTCCCCCTCCACCAATCATCGCTGGCTACTAA	2277	0.4862	MHFSSSHYCKMHVFGCLLILLSLFIILSPSHALSRDEASFIARRQLLTLEENADLPDNYVENYQINLTFDNLRLKGAYIALEAWKHAIYSDPSNFTSNWVGPDVCSYNGVYCAPPPDNSSIQVVAGIDLNHADIAGYIPTEIGLLTDLALLHINSNRFCGILPKSFSKLKLLYELDISNNRFVGPFPSHVLSISDLHYLDIRFNDFEGELPSEVFNTTLDAIFMNNNRFTSNIPESIGGSSASVIVLANNHFQGCIPGSIGQMRNKLNEFVVTNNNLTGCLPGEIGKLSEVEVLDISDNNFVGVLPRTLTGLKEVQVLSIADNKLTGFVPKSVCELGNLKNFTFSKNYFNGEEEGCVPKTRKGVKMDDQNNCIPERPKQRDGNSCNVVISKPVDCSKAQCNSGGGGGGEKPAPKTPSSRSSPSSNNTPKPSKEKQTPSSPSNKRQKPKPSSPKPTPPTDKPTPASPKPTPTPTPQTPKTSNPKPEKAPPKNDDYDDHYEAPKERNRPPKSPPPSQSQSPAPVVQSPPPTPVYSPPPPPLQSPSPAPAPVVHSPPPPPVYSPPPPVNSPPPSVQSPPPPIYSPPPPVYSPPPTPTNSPPPPVYSPPPTPTYSPPPPVYSPPPTPIYSPPPPVYSPPPTPIYSPPPPVYSPPPTPMYSPPPPPVYSPPPNSPPPPVQSPPPPVQSPPPPVLSPPPPVNSPPPPVNSPPPPVYSPPPLVNSPPPPPPVVSAPPPQDDEDMVLPPDFGSSYASPPPPIIAGY	758

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc211483g00033	758	MobiDBLite	consensus disorder prediction	400	619	-	-
	Stsc211483g00033	758	Gene3D	Ribonuclease Inhibitor	78	377	IPR032675	-
	Stsc211483g00033	758	Pfam	Leucine rich repeat	290	347	IPR001611	GO:0005515
	Stsc211483g00033	758	MobiDBLite	consensus disorder prediction	362	385	-	-
	Stsc211483g00033	758	SUPERFAMILY	L domain-like	80	354	-	-
	Stsc211483g00033	758	PANTHER	LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED	18	545	-	-
	Stsc211483g00033	758	MobiDBLite	consensus disorder prediction	414	446	-	-
	Stsc211483g00033	758	FunFam	Leucine-rich repeat extensin-like protein 1	78	239	-	-
	Stsc211483g00033	758	MobiDBLite	consensus disorder prediction	507	619	-	-
	Stsc211483g00033	758	MobiDBLite	consensus disorder prediction	447	484	-	-
	Stsc211483g00033	758	FunFam	Leucine-rich repeat receptor protein kinase EMS1	240	332	-	-
	Stsc211483g00033	758	PRINTS	Proline rich extensin signature	457	473	-	-
	Stsc211483g00033	758	PRINTS	Proline rich extensin signature	419	431	-	-
	Stsc211483g00033	758	PRINTS	Proline rich extensin signature	436	457	-	-
	Stsc211483g00033	758	PRINTS	Proline rich extensin signature	474	491	-	-
	Stsc211483g00033	758	PRINTS	Proline rich extensin signature	501	526	-	-
	Stsc211483g00033	758	MobiDBLite	consensus disorder prediction	641	758	-	-
	Stsc211483g00033	758	MobiDBLite	consensus disorder prediction	641	736	-	-
	Stsc211483g00033	758	MobiDBLite	consensus disorder prediction	485	506	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc211483g00033	Stsc-Chr211483	167873	170413	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc211483g00033	14	488	Trihelix Transcription Factor Family	AT3G19020	50.370	2.87e-169	510

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc211483g00033	-		-	ahf:112705802	718.768