Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211483g00026 ATGGATCCTTCTAACTATAACAACCCTTCTTCTCCTTCTTCTTTTTATTTTTCTTCTTCAACTTTCTCTTCAGCTAACACCAAGGGCCAGTCGCTTCAGCAGCGGAGGCTTACGAGACAGAGGAGGCTTTGCGACCATGACGCTGCCACCACCGACACCTATTCCTTGCCGGCTTCCCCTCTCCCTTCTTTCAAGTCCTCCGACTCTCCTGCCGTCCCTCTCCCCCTCCCGCGTCCTGACTCCCCGTTGACCCGCCGTCCAGAGTCAACTAGTCCCAACTCCGGCCATCCTTTCTTTGCCACTTCGCGTATCAGAAACAGTTTGGATCATGATGCAGCCAAAAATGTAAGATCTCCAAGCAATTTGCGTAGATCCTCTTTTGATCCCTCCACCGAGACTGCAACATATGATTTAAGGGTCAATATACCTTCTACAACCGTCTTCTCTGGCAATGTTACATACAGAGATCCCCAAGAACACTCTCATGATAACTATTCTGACTTGAAACTGCATTATGCTGCTAAGAGTGCCCCAACAAGCATATTATCAAGTCCTGTTACTAGTCCTCGTAGATCCAGCAATGTAGATTTCTATGATCCTTTCATGCATTTTACTCAAGATTTCAATGAAACTTCGAAGGTATCGCCACCTAGAACACTTCATAGTCCGGACCGTTCTCCCCTTAGGGGCCGGAGTCCTTTCCACAATTCGAATAACGTTCGAGAGGGATCTCGGCCTGAAAACAATGCTCATCCATTACCCCTTCCTCCTAAATCTCCATCGCCAGCTCAATCAACTATCATGCATCAAACTTCTGAGATTTCACCCTCCATTAAGAAGGGTCCATGGCAGAAAGGGAAGCTCATTGGCCGTGGATCATTTGGAAGTGTTTATCATGCTACCAACCTGGAAACGGGAGCATCTTGTGCAATGAAAGAGGTGGATCTGATTCATGATGATCCTAAGTCCGCGGATTCCTTAAAGCAATTAGAGCAGGAAATCAGAATTCTCCGTCAGCTACACCACCCTAACATTGTGCAGTATTATGGCAGTGAAATAGTTGGTGATCACTTGTACATATATATGGAGTATGTTCATCCTGGATCCATTCATAAATTTATACATGAAAATTGTGGAGCTATGACAGAGTCTGTTGTTCGCAATTTCACTCGCCATATTCTCTCTGGATTGGCATACTTACATAATACAAAGACTATCCACAGGGATATCAAAGGTGCAAACTTGCTGGTTGATGCCTCTGGCATTGTCAAGCTTGCAGATTTTGGGGTGTCAAAAATTCTGACAGAGAAATCATATGAACTTTCATTGAAGGGAAGTCCCTACTGGATGGCTCCTGAGCTCATGATGGCCGCCATAAAAAAAGAATCAAATCCTGAAATTGCCATGGCCATTGACATATGGAGCTTAGGGTGCACAATCATCGAAATGCTGACCGGCAGACCTCCTTGGAGCGAGTTTGAAGGGCCTCAAGCAATGTTCAAGGTACTGCACAGATCCCCACCTATACCAGTAACACTATCTTCGGAGGGACAGGATTTCCTTCAGCAGTGTTTCAGAAGGAACCCCGCGGATCGGCCAACAGCAGCAGCCCTCCTTACACACGCCTTTGTACAAAATTTGCATGATCAAGATGTCCCAATTCATCCACAACCAGTCTATCATCCTAGAGCAGACCCAGGACCAAAAGAGAATACACGTAGACGCCATAGCCCAAAACACAATTCAAAAACTAGTCCTAGACACTCCATTGGCTCCAGGATTATTAACAAGATTCAGAGTATAATCGGGTAA 1812 0.4558 MDPSNYNNPSSPSSFYFSSSTFSSANTKGQSLQQRRLTRQRRLCDHDAATTDTYSLPASPLPSFKSSDSPAVPLPLPRPDSPLTRRPESTSPNSGHPFFATSRIRNSLDHDAAKNVRSPSNLRRSSFDPSTETATYDLRVNIPSTTVFSGNVTYRDPQEHSHDNYSDLKLHYAAKSAPTSILSSPVTSPRRSSNVDFYDPFMHFTQDFNETSKVSPPRTLHSPDRSPLRGRSPFHNSNNVREGSRPENNAHPLPLPPKSPSPAQSTIMHQTSEISPSIKKGPWQKGKLIGRGSFGSVYHATNLETGASCAMKEVDLIHDDPKSADSLKQLEQEIRILRQLHHPNIVQYYGSEIVGDHLYIYMEYVHPGSIHKFIHENCGAMTESVVRNFTRHILSGLAYLHNTKTIHRDIKGANLLVDASGIVKLADFGVSKILTEKSYELSLKGSPYWMAPELMMAAIKKESNPEIAMAIDIWSLGCTIIEMLTGRPPWSEFEGPQAMFKVLHRSPPIPVTLSSEGQDFLQQCFRRNPADRPTAAALLTHAFVQNLHDQDVPIHPQPVYHPRADPGPKENTRRRHSPKHNSKTSPRHSIGSRIINKIQSIIG 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211483g00026 603 MobiDBLite consensus disorder prediction 552 591 - -
Stsc211483g00026 603 FunFam Mitogen-activated protein kinase kinase kinase 5 280 583 - -
Stsc211483g00026 603 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 18 556 - -
Stsc211483g00026 603 MobiDBLite consensus disorder prediction 84 101 - -
Stsc211483g00026 603 MobiDBLite consensus disorder prediction 1 131 - -
Stsc211483g00026 603 MobiDBLite consensus disorder prediction 262 278 - -
Stsc211483g00026 603 SMART serkin_6 283 544 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211483g00026 603 ProSitePatterns Protein kinases ATP-binding region signature. 289 312 IPR017441 GO:0005524
Stsc211483g00026 603 SUPERFAMILY Protein kinase-like (PK-like) 261 591 IPR011009 -
Stsc211483g00026 603 MobiDBLite consensus disorder prediction 208 284 - -
Stsc211483g00026 603 Gene3D Transferase(Phosphotransferase) domain 1 281 580 - -
Stsc211483g00026 603 ProSiteProfiles Protein kinase domain profile. 283 544 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211483g00026 603 MobiDBLite consensus disorder prediction 1 37 - -
Stsc211483g00026 603 Pfam Protein kinase domain 284 543 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211483g00026 603 MobiDBLite consensus disorder prediction 52 66 - -
Stsc211483g00026 603 MobiDBLite consensus disorder prediction 231 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211483g00026 Stsc-Chr211483 133174 137132 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211483g00026 232 546 MAP Kinase Kinase Kinase AT5G66850 65.109 7.28e-149 444
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Stsc211483g00026 Pkinase 3.5e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211483g00026 - - lang:109327987 765.377