Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211483g00021 ATGGAAGCATTATTGAATAATAGAAGCTCATCTTGCACGGCGTCTTCGTCGGACTCATCTTCATCGGAGTCAACGCAAAGGAATAATAATAGGGCGGAGAGGATCAAAGGTCCATGGAGCGCAGAAGAAGATAGGATCTTGACACGCCTCGTGGAGAGATACGGGGCAAGAAACTGGTCTCTCATTAGTCGCTACATAAAGGGAAGGTCCGGCAAGTCCTGCAGGCTGAGATGGTGCAACCAGCTCAGCCCCACGGTGGAGCACCGTCCCTTCTCCTCCCACGAGGACGAAACCATCATCGCCGCACATGCTCAGTACGGTAACAGGTGGGCCACCATTGCGAGGCTATTACCCGGCCGAACCGATAATGCCGTTAAGAATCACTGGAACTCCACTCTAAAGCGCAGGGCCAGAGAACAGCGCCGTACGGAAGGTGCTCTTGCTTTGGCGGCAACAAATAATAATGAGAGGGGGTCGTGTTCTTCGGGGGGCGTGCCAGTGCCAGCTTGCGCGTTGCCGTTGGAGGATGATCCGTTGACCGCGTTGACTCTTGGTCCGCCCGGGATTGATCGTGGTAACGGTGCGGTGGAGGCCGAGCAACAGCGGGAGAGTAGTGTGGGTTCATCGGGGTTTTGGGATGTTATGAGGGATGTCATTGCGAGGGAAGTGAGGGAATATGTATCTTCGAATTTCTCTGATCATCATTCCAATTTTCATTGA 720 0.5347 MEALLNNRSSSCTASSSDSSSSESTQRNNNRAERIKGPWSAEEDRILTRLVERYGARNWSLISRYIKGRSGKSCRLRWCNQLSPTVEHRPFSSHEDETIIAAHAQYGNRWATIARLLPGRTDNAVKNHWNSTLKRRAREQRRTEGALALAATNNNERGSCSSGGVPVPACALPLEDDPLTALTLGPPGIDRGNGAVEAEQQRESSVGSSGFWDVMRDVIAREVREYVSSNFSDHHSNFH 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211483g00021 239 FunFam MYB transcription factor 36 87 - -
Stsc211483g00021 239 Pfam Myb-like DNA-binding domain 39 97 - -
Stsc211483g00021 239 ProSiteProfiles Myb-like domain profile. 83 133 IPR001005 -
Stsc211483g00021 239 CDD SANT 90 133 IPR001005 -
Stsc211483g00021 239 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 31 86 IPR017930 -
Stsc211483g00021 239 SUPERFAMILY Homeodomain-like 34 129 IPR009057 -
Stsc211483g00021 239 SMART sant 35 84 IPR001005 -
Stsc211483g00021 239 SMART sant 87 135 IPR001005 -
Stsc211483g00021 239 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 88 137 IPR017930 -
Stsc211483g00021 239 PANTHER MYB PROTEIN-RELATED 36 159 - -
Stsc211483g00021 239 CDD SANT 38 80 IPR001005 -
Stsc211483g00021 239 Gene3D - 35 87 - -
Stsc211483g00021 239 MobiDBLite consensus disorder prediction 1 36 - -
Stsc211483g00021 239 MobiDBLite consensus disorder prediction 1 33 - -
Stsc211483g00021 239 Gene3D - 89 158 - -
Stsc211483g00021 239 ProSiteProfiles Myb-like domain profile. 31 82 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211483g00021 Stsc-Chr211483 125818 126790 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211483g00021 32 136 MYB Transcription Factor Family AT3G50060 78.095 7.47e-58 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc211483g00021 Myb_DNA-bind_6 5.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211483g00021 - - lang:109327990 288.5