Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211483g00014 ATGCAATCCAACGGCTCTGATTCGCACAACCACCAACCAACGGAGCAGAATCAACGGCAACAGCACACGCCACCGCACCCGCAGGCACTGCAACTGCCGCAGCAGTGGGTGCCGATGCAGTACCCAGCCACCGCCATGGTAATGCAGCACCCCATGCTGCCGCCTCAACATTACGCTCCGGCGCCACCTCAGCCCTACATGCCCTACCACCAGTACCAGCAGCAGCTCCCTCACGTTACCCCCCACCACTCCCATCAGCACCAGCCTCAGGGATCCTCCGCCGAGAACAAGACGATCTGGGTCGGAGATTTGCATCATTGGATGGACGAGAGTTATCTCCACCGCTGCTTTGCTTCCACCGGCGAGATTTCGTCCATCAAGCTTATTCGCAATAAGCAGACAGGTCTATCAGAGGGTTATGGATTTGTGGAATTCTATTCACACGGCACAGCTGAGAAAGTTTTACAGAACTATGCTGGAATCTTGATGCCAAACACAGAGCAGCCTTTCAGGCTGAACTGGGCAACGTTTAGCACAGGAGACAAGCGTTCAGACAATGTTCCAGACCTTTCAATTTTTGTAGGAGATTTAGCTGCAGATGTTACAGATAGCCTCTTGCATGAGACTTTCTCTAGTAGATACCCTTCTGTTAAGGCTGCTAAAGTTGTTTTTGATGCCAACACTGGCCGCTCCAAGGGCTATGGTTTCGTCAGGTTTGGTGATGATAATGAAAGGTCTCAAGCTATGACTGAAATGAATGGTGTTTACTGTTCTAGCAGGCCTATGCGTATTGGAGCTGCAACTCCTAGGAAATCATCTGCCTATCAACAAGGAGGGCAATCAAATGGCACATCTAGCCAATCTGAAACTGATTCAACTAACACAACTGTAAGTTTTTGA 900 0.5011 MQSNGSDSHNHQPTEQNQRQQHTPPHPQALQLPQQWVPMQYPATAMVMQHPMLPPQHYAPAPPQPYMPYHQYQQQLPHVTPHHSHQHQPQGSSAENKTIWVGDLHHWMDESYLHRCFASTGEISSIKLIRNKQTGLSEGYGFVEFYSHGTAEKVLQNYAGILMPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAADVTDSLLHETFSSRYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKSSAYQQGGQSNGTSSQSETDSTNTTVSF 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211483g00014 299 FunFam Polyadenylate-binding protein RBP47B 96 176 - -
Stsc211483g00014 299 Gene3D - 96 176 IPR012677 -
Stsc211483g00014 299 MobiDBLite consensus disorder prediction 1 29 - -
Stsc211483g00014 299 MobiDBLite consensus disorder prediction 270 299 - -
Stsc211483g00014 299 MobiDBLite consensus disorder prediction 267 299 - -
Stsc211483g00014 299 SUPERFAMILY RNA-binding domain, RBD 58 178 IPR035979 GO:0003676
Stsc211483g00014 299 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 192 261 IPR000504 GO:0003723
Stsc211483g00014 299 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 99 166 IPR000504 GO:0003723
Stsc211483g00014 299 FunFam Polyadenylate-binding protein RBP47C isoform A 189 265 - -
Stsc211483g00014 299 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 97 177 IPR000504 GO:0003723
Stsc211483g00014 299 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 190 269 IPR000504 GO:0003723
Stsc211483g00014 299 CDD RRM2_SECp43_like 189 268 - -
Stsc211483g00014 299 CDD RRM1_SECp43_like 98 178 - -
Stsc211483g00014 299 Gene3D - 178 296 IPR012677 -
Stsc211483g00014 299 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 87 284 - -
Stsc211483g00014 299 SMART rrm1_1 98 173 IPR000504 GO:0003723
Stsc211483g00014 299 SMART rrm1_1 191 265 IPR000504 GO:0003723
Stsc211483g00014 299 SUPERFAMILY RNA-binding domain, RBD 173 286 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211483g00014 Stsc-Chr211483 79136 82722 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211483g00014 78 267 Eukaryotic Initiation Factors Gene Family AT4G34110 26.341 5.36e-14 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211483g00014 - - gmx:100785454 439.884