Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211481g00023 ATGGAACACCGAAGTGAAATGCAAGCAACCGAACTTCTTAAAGCTCAAAGCCACATTTGGAACCATATATTCAATTTCATAAATTCTATGTCCCTTAAATGCGCTATTGACTTAAACATACCTGAAGCCATTTATAATTATGGTCAACCCATGCCCCTCTCAAAGCTTATCATTTCATTGCAAATTCATCCATCGAAATCCTCCTTCGTCCATCGATTAATGAAAATCTTGATTCATTCCGGCTTCTTCGCTACCAAGAATGTGGCCAAGGCCAACAACAATGAGCTCGAAGAAGTCGGGTATGTTCTAACGGATTCATCCATGTTGCTACTTAAGGACAACCCCTTAAGTGTGACGCCATTCTTGCTTGCCATGCTTGATCCCGTTTTCACAAAACCATGGCATCAATTGTCAATGTGGTTCAGAAATGATGATGCTACACCATTTCAAACTGAACATGGGATAACATTTTTTGAATTTTTTGGCTGCGAGCCTAAGATTAACAATCTTTACAATGACGCCATGGCAAGTGATGCTCGATTGGTTTGCAATTTATTACTTGATGACATGTATAAGGGTGTGTTTGAGGGTTTTGAATCATTGGTTGATGTTGGTGGAGGCACTGGAACTCTTGCAAAAGCTATTGCCAAATCATTTCCACGGTTAGAGTGCACTGTATTTGATCTACCTCATGTTGTTGCTGGCTTGGAATTGGAAGGAACTGAGAACCTTAAATATGTTGGAGGAAACATGTTTGATGTCATTCCTCCTTCTCATGCCATTATGTTGAAGTGGATTTTGCATGACTGGACGGATGAGGATTGTTTGAAGATATTGAGGAATTGCAAAAAGTCAATCATAAATAATGGCGGCAAAGGAGGGAAGGTGATTATCATAGATATGTTGATGAAGGATGATGAGAAGAACAAAGGAGTAGGTGACGATGAATCACTTCAAACACAACTCTTCTTTGACATGCTGATGATGGTGTTGCTCACCGGAAAGGAAAGGAATGAAAAAGAGTGGGCCAATTTAATATTTGCTGCTGGTTTTAGTGACTACAAGATAACTCCAATTCTAGGACCAAGGTCTCTCATTGAGATATATCCATAA 1113 0.3962 MEHRSEMQATELLKAQSHIWNHIFNFINSMSLKCAIDLNIPEAIYNYGQPMPLSKLIISLQIHPSKSSFVHRLMKILIHSGFFATKNVAKANNNELEEVGYVLTDSSMLLLKDNPLSVTPFLLAMLDPVFTKPWHQLSMWFRNDDATPFQTEHGITFFEFFGCEPKINNLYNDAMASDARLVCNLLLDDMYKGVFEGFESLVDVGGGTGTLAKAIAKSFPRLECTVFDLPHVVAGLELEGTENLKYVGGNMFDVIPPSHAIMLKWILHDWTDEDCLKILRNCKKSIINNGGKGGKVIIIDMLMKDDEKNKGVGDDESLQTQLFFDMLMMVLLTGKERNEKEWANLIFAAGFSDYKITPILGPRSLIEIYP 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211481g00023 370 FunFam O-methyltransferase ZRP4 112 370 - -
Stsc211481g00023 370 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 370 IPR016461 GO:0008168
Stsc211481g00023 370 Gene3D - 2 110 IPR036388 -
Stsc211481g00023 370 PIRSF O-mtase 1 370 IPR016461 GO:0008168
Stsc211481g00023 370 Gene3D Vaccinia Virus protein VP39 111 370 IPR029063 -
Stsc211481g00023 370 Pfam O-methyltransferase domain 134 352 IPR001077 GO:0008171
Stsc211481g00023 370 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 115 368 IPR029063 -
Stsc211481g00023 370 FunFam Coniferyl alcohol 9-O-methyltransferase 2 110 - -
Stsc211481g00023 370 SUPERFAMILY "Winged helix" DNA-binding domain 9 115 IPR036390 -
Stsc211481g00023 370 PANTHER O-METHYLTRANSFERASE 11 355 IPR016461 GO:0008168
Stsc211481g00023 370 Pfam Dimerisation domain 30 77 IPR012967 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211481g00023 Stsc-Chr211481 136098 138122 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211481g00023 30 356 Monolignol Biosynthesis Gene Families AT5G54160 31.420 1.85e-47 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211481g00023 - K16040 aip:107609507 619.387