Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211481g00022 ATGGAATTCCAAAGTGGAGATCAAGCTAATAATAACAAACTGCTGAAAGCTCAATGCCTAATATGGAATCATATGTATAGTTTTGTAAACTCTGTTTCCCTTAAATGTGCTGTTGACTTAGATATTCTTGAAACCATACACAAACATGGCAAGCCTATGTCCCTCTCTCAACTCATTTCTTCATTGCAAATTCACCCTTCAAACACCACCTTCATCCATCGCTTGATCAGAATCTTGACACATTCCGGCTTCTTCGCGACCAAGAATGTGACCGATAATAACAATTTGGTTGAAATCGGGTATGTCCTGACCGATTCGTCTATGTTGTTACTTAAGGAACACCCCTTAGGTATAAGGACTTTCTTTGTTAACTCGCTTGATCCAATTTTGACAAATCCATGGCATAAGTTGTCAACATGGTACAAAAATGATGATCCTACGCCTTTTAAAACAGAACATGGGATAAAGGTTTGGGAGTATGGTGGCCGGGAACCTAGACTCAATAACTTGATCAATGAAATGATGGCAAGTGATACTAGATTCATTAGCAAAATGGTGATTGAGAAGTGCAAAGGTGTGTTTGAAGGTTTGCAATCATTGGTTGATGTTGGTGGAGGAAATGGAACTCTTGCAAAAACTATAGCCAAATCATTTCCAGAATTGGAGTGCACTGTTTTTTATCTTCCACATGTTGTTGCGGACTTGCAAGGGAGTGACAACCTTAAATATGTTGGAGGGAGCATGTTTGAGGCCATTCCTCCTGCAGATGCCATTGTGTTGAAGATATGTTGGGAGAGAGGCTCGAATCTGAGACCTCTACTCGGGGAAGGAAACATATGTCATTTGAGCTACAGCTCATTGACCGATGTACCGAACAATGATCCAATGGACCTTAGTCGTGAGAGGAAGTAG 912 0.4068 MEFQSGDQANNNKLLKAQCLIWNHMYSFVNSVSLKCAVDLDILETIHKHGKPMSLSQLISSLQIHPSNTTFIHRLIRILTHSGFFATKNVTDNNNLVEIGYVLTDSSMLLLKEHPLGIRTFFVNSLDPILTNPWHKLSTWYKNDDPTPFKTEHGIKVWEYGGREPRLNNLINEMMASDTRFISKMVIEKCKGVFEGLQSLVDVGGGNGTLAKTIAKSFPELECTVFYLPHVVADLQGSDNLKYVGGSMFEAIPPADAIVLKICWERGSNLRPLLGEGNICHLSYSSLTDVPNNDPMDLSRERK 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211481g00022 303 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 22 303 IPR016461 GO:0008168
Stsc211481g00022 303 SUPERFAMILY "Winged helix" DNA-binding domain 11 115 IPR036390 -
Stsc211481g00022 303 PIRSF O-mtase 1 268 IPR016461 GO:0008168
Stsc211481g00022 303 Gene3D Vaccinia Virus protein VP39 112 283 IPR029063 -
Stsc211481g00022 303 Pfam O-methyltransferase domain 134 261 IPR001077 GO:0008171
Stsc211481g00022 303 FunFam Coniferyl alcohol 9-O-methyltransferase 4 110 - -
Stsc211481g00022 303 Gene3D - 4 110 IPR036388 -
Stsc211481g00022 303 PANTHER O-METHYLTRANSFERASE 26 262 IPR016461 GO:0008168
Stsc211481g00022 303 Pfam Dimerisation domain 33 80 IPR012967 GO:0046983
Stsc211481g00022 303 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 119 264 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211481g00022 Stsc-Chr211481 105435 106598 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211481g00022 32 263 Monolignol Biosynthesis Gene Families AT5G54160 35.319 1.38e-36 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211481g00022 - - ahf:112762995 458.759