Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211479g00013 ATGGCCGCAATGAATTCGATTCCAGGGTATCGGTTTCATCCAACCGATGTGGAGTTGATTCAGTACTTTCTGAGAAGGAAGGTGCTGGGGAAGAGATTCCCTTGTGATGTGATTGCTGAACTTGATATATACAAGTATACGCCGTGGGATCTGCCAGATCACTCTTTGCTTAAAACTGGGGATTTGGAATGGTACTTCTTTTGCCCTCGAGGGAAGAAGTATTCGAGCGGGGTGAGGATGAATAGGGCGACAGAATGTGGGTACTGGAAGACTACTGGCAAGGATAGATCAGTTGAACACAAGAAGCATGTTGTGGGGATGATAAAGACCCTGGTGTTTCACAAGGGCAAAGCACCCAAGGGTGATCGAACTGATTGGGTGCTACATGAATACAGACTTCAAGATCAGGAGCTTGCTGACAAGGGTGTTCAACAGGATTCTTATGTGATATGTAAGGTGTACCAAAAGGAGGGTCCTGGTCCTAGGAATGGTGCACAATACGGAAGGCCATTTAATGAGAAAGACTGGGATACAGACGATGAAATTGACTGTGTAGAATCTGCACCTGTTTCTGCTCCATCTGCTGCAGTTCCTATAGAACCCACTTCATGTCATAGCTCAGTTGTGAATAACGTGAATCTCTCTATGAGTGAATCCCATGGGTTGACCAATGTTTCCTGTTTAACAGGGCCAGTGCCTTCTTGCTCAGCACATCCTTCAGCTCCAAGTAATCAAGTTGATCTTGCCATTATACCAATGCCTCATTCCTCCATAGAAGATAACACAATGGCTCCTACCGAGAACAACATAATTGAGAAAGTTGACAATCCTCCTGACGGAAACAATGCTGAAGGAACACCTTGCTTTGATCCCAATGAGATTTTCAGGGACCTGGGTGACCTTGATGGTTTGTTCAAAATGGGTGAAGATGGACATGGTTTTTCCTGTGGTCAAAACAGTGGATATAATGTCGATGAAATGCTTTCCGTGGGTGATGGGTTGTGTTTCCGTGATGCCTTGGACTACTTGGAGTTGGGTGACCTCGAGACCCCATTGTTATGGAAGACTAATGAACAAGGAAATTGGAGCCAGGACGATACATGA 1104 0.4529 MAAMNSIPGYRFHPTDVELIQYFLRRKVLGKRFPCDVIAELDIYKYTPWDLPDHSLLKTGDLEWYFFCPRGKKYSSGVRMNRATECGYWKTTGKDRSVEHKKHVVGMIKTLVFHKGKAPKGDRTDWVLHEYRLQDQELADKGVQQDSYVICKVYQKEGPGPRNGAQYGRPFNEKDWDTDDEIDCVESAPVSAPSAAVPIEPTSCHSSVVNNVNLSMSESHGLTNVSCLTGPVPSCSAHPSAPSNQVDLAIIPMPHSSIEDNTMAPTENNIIEKVDNPPDGNNAEGTPCFDPNEIFRDLGDLDGLFKMGEDGHGFSCGQNSGYNVDEMLSVGDGLCFRDALDYLELGDLETPLLWKTNEQGNWSQDDT 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211479g00013 367 Gene3D NAC domain 15 158 IPR036093 GO:0003677|GO:0006355
Stsc211479g00013 367 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 219 - -
Stsc211479g00013 367 ProSiteProfiles NAC domain profile. 6 156 IPR003441 GO:0003677|GO:0006355
Stsc211479g00013 367 FunFam Nac domain-containing protein 86 15 159 - -
Stsc211479g00013 367 Pfam No apical meristem (NAM) protein 8 133 IPR003441 GO:0003677|GO:0006355
Stsc211479g00013 367 SUPERFAMILY NAC domain 4 156 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211479g00013 Stsc-Chr211479 114831 118042 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211479g00013 1 359 NAC Transcription Factor Family AT5G09330 42.149 3.41e-89 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc211479g00013 NAM 1.2e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211479g00013 - - adu:107470479 646.351