Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211479g00003 ATGCCTCTCTATGAGTTATACCGCCTTTCTAGAGAGAAGAATGATGAAGAGATTAATGCCACACGTGCTACTGATCAATATCAATCTTCCTCGCCTGAGAAGGATTTTTTCGAGCTAATTTGGGAAAACGGCAACATTTTGACGACACAGGGTCAGTCAAGTAGAGCTAGGAGGAGTCCGCCTCGCCGGAGCTTACCGTCTCACTGCTTGCCATCTCACAGTCCCAAGGGTAGAGACAGAGATGCAGGGTATGTTACCAATACAAAGGTAGGGAAGTCTGGGGATTTAGGTACCGGATTGAATGAATTTTCGATGTCAGTGCCATCGACTGAAGTGGATTTGTGTCATGATGAAGATGTCATACCTTGGTTGGATTACACAATGGATGGCTCTTTGCAGAATGAGTATGGTTCTAATTTCTTACATGAACTATCCAGGGTCACGGAACAGGATCTCCCCTCAAATAATATTTCTCTTGTGGATAAAAGTAGTGGCAATCAGGTATTTAGGAACTCTCATAAGAATTCTGCAGAACAAAGCAACTTTTCCAGGGTTTCTTTGACCGGCATACATGAGACAACTAGACCTAAAGCTAGCACAGGTGAATTATACCCGCCATCATCGATTATTTCAGGTGGATCAAGAGTATCGGATATTACTGCGAACAATAGTAATGCAATGCTTCATCCCACAGCTACTGAGATTCCTTCTTCGTCAAGTGGTTTTTCAAACTTAAAGATGCAGAAGCAAGATCAAGTTATGACTAGCAATTATTCATCCATTTTGAATTTCTCCCATTTCGCAAGGCCTGCCAGTGTCGTGAGAGCTAATCTTCAGAACATTGGGCTGAAGTCTGTTTCTTCTTCATCAAGATCTGCAAATAGGGGAAGTATGAATAATGGTGCTGCTGTACCTAACAGTAGTCTTCCAGAATCAACTCTTGCTGATTCATGTGGTGAATGTCCGAAAGATCTAATGGGGAACTGCGAGAAGGTTATGGAACAACCCAGGGATGATTTGAAACTCTTGGAGTCAAAATCTCTAGAACAGAAAATTGCTGGTTCTGAACAGTCAGACCCTGCTAGCAAGGAGAAAGCCATTATTAAGATTGATCAAACTTCCAAAAATGCTCTTGGCGAAACAGCCACTAATGGACAGATGGCTGCTGAAAGAAGTACGGAGCTGGTGGTAGCCTCTTCCTCTGTAGGCTCTGGCAACTGTGCAGACAGAGGTTCGGACGATCCAATTCAAAATTTGAAGCGAAAAAATCAAGACACTGAGGACTCTGAATGGCATAGTGATGATGTTGAGGAAGAATCAGTGGGTGTTAAAAAAGGAACTGCTGGACGTGGAGCTTCAGGTTCCAAGAGAAGTCGTGCAGCTGAAGTGCATAATCTTTCTGAAAGGAGGCGAAGAGATAGGATCAACGAGAAGATGCGTGCATTGCAAGAACTCATACCCAATTGCAATAAGGTGGATAAAGCTTCAATGCTGGATGAGGCAATTGAGTATCTTAAATCACTTCAGCTCCAAGTTCAAATGATGTCGATGGGAACCGGTTTATACATGCATCCAATGATGTTGCCACATGGAATGCAGCACATGCATGCACCACACTTGGCTACTTTTTCGCCTATGGCCTATGGAATGCAAATGGGATTAGGTATGGGTTATGGCATGGCTATGCCTGATATGAATGGTGTATCATCTCGATTCCCAATGATTCAGGTTCCCCAAATGCAAGGAACTCATCTCCCTGTTGCACATATGTCTGGACCTAATGCAATGGTCAGATCAAATACTCCAGGGTTTGGCCTTCCAGGTCAGGGATTTTCCTTGCCACTCCCTCGTGCACCCTTATTTCCTTTCTCAGGAGGGCCTGTTATGAACTCATCATCGGCTCCAGGATTACGTCCTTGTGGAACCACGGGGCTTGGTCAAACTGCGGATCCAGCTTCGACATCTGGCTTAAAGGACCCTTCGCTTAACGCGGATTCACTGGTTAAGCAAAGTACTGGTGGTGGCGGCTGCGACTCAACTAGTCAGTGTGAAGAAGAAGCAGCAGCAGCAGCAGCAGTAGCACCAACTGTTGGATTTGAGCAATCAGCAATGGTGCATAACAACAGCCATACGTCTGAGCCTAATGACAGTGGAACTCTTAATCCTGACAAAGAAGATAATCTTGTGACTGGTTATGATGGTTGA 2205 0.4454 MPLYELYRLSREKNDEEINATRATDQYQSSSPEKDFFELIWENGNILTTQGQSSRARRSPPRRSLPSHCLPSHSPKGRDRDAGYVTNTKVGKSGDLGTGLNEFSMSVPSTEVDLCHDEDVIPWLDYTMDGSLQNEYGSNFLHELSRVTEQDLPSNNISLVDKSSGNQVFRNSHKNSAEQSNFSRVSLTGIHETTRPKASTGELYPPSSIISGGSRVSDITANNSNAMLHPTATEIPSSSSGFSNLKMQKQDQVMTSNYSSILNFSHFARPASVVRANLQNIGLKSVSSSSRSANRGSMNNGAAVPNSSLPESTLADSCGECPKDLMGNCEKVMEQPRDDLKLLESKSLEQKIAGSEQSDPASKEKAIIKIDQTSKNALGETATNGQMAAERSTELVVASSSVGSGNCADRGSDDPIQNLKRKNQDTEDSEWHSDDVEEESVGVKKGTAGRGASGSKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKSLQLQVQMMSMGTGLYMHPMMLPHGMQHMHAPHLATFSPMAYGMQMGLGMGYGMAMPDMNGVSSRFPMIQVPQMQGTHLPVAHMSGPNAMVRSNTPGFGLPGQGFSLPLPRAPLFPFSGGPVMNSSSAPGLRPCGTTGLGQTADPASTSGLKDPSLNADSLVKQSTGGGGCDSTSQCEEEAAAAAAVAPTVGFEQSAMVHNNSHTSEPNDSGTLNPDKEDNLVTGYDG 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211479g00003 734 CDD bHLH_AtPIF_like 459 521 IPR047265 -
Stsc211479g00003 734 PANTHER TRANSCRIPTION FACTOR PIF3 1 675 IPR044273 GO:0003700|GO:0006355
Stsc211479g00003 734 MobiDBLite consensus disorder prediction 414 429 - -
Stsc211479g00003 734 MobiDBLite consensus disorder prediction 632 688 - -
Stsc211479g00003 734 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 459 508 IPR011598 GO:0046983
Stsc211479g00003 734 MobiDBLite consensus disorder prediction 381 467 - -
Stsc211479g00003 734 MobiDBLite consensus disorder prediction 48 85 - -
Stsc211479g00003 734 MobiDBLite consensus disorder prediction 701 734 - -
Stsc211479g00003 734 MobiDBLite consensus disorder prediction 701 724 - -
Stsc211479g00003 734 MobiDBLite consensus disorder prediction 646 679 - -
Stsc211479g00003 734 SMART finulus 465 514 IPR011598 GO:0046983
Stsc211479g00003 734 MobiDBLite consensus disorder prediction 285 314 - -
Stsc211479g00003 734 FunFam Basic helix-loop-helix transcription factor 454 517 - -
Stsc211479g00003 734 MobiDBLite consensus disorder prediction 381 407 - -
Stsc211479g00003 734 Gene3D - 454 517 IPR036638 GO:0046983
Stsc211479g00003 734 Pfam Helix-loop-helix DNA-binding domain 463 509 IPR011598 GO:0046983
Stsc211479g00003 734 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 456 521 IPR036638 GO:0046983
Stsc211479g00003 734 MobiDBLite consensus disorder prediction 285 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211479g00003 Stsc-Chr211479 34997 39600 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211479g00003 1 605 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 33.816 2.49e-68 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc211479g00003 HLH 3.8e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211479g00003 K12126 - gmx:100794974 829.706