Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211478g00041 ATGGAGAATAATGGTTGCTTGCCATGTACTACACTTCGTGAAGGCTTTCCAGCTGGATTGAGAGTTTTGGTTGTTGATGATGATCCAACATGGCTCAAAATCCTTGAAAAGATGCTCAAGAAGTGCTCTTACCAAGTGACTACATGTTGTTTGGCAACGGAGGCTCTAAAGAAGCTTCGAGAGAGGAAAGATGCATTCGACATAGTGATCAGCGATGTAAACATGCCTGACATGAATGGATTCAAGCTTCTTGAGCATGTTGGACTTGAGATGGATCTCCCTGTCATTATGATGTCTGTTGATGGAGAAACAAGCCGGGTAATGAAAGGTGTTCAACATGGAGCATGTGATTATCTCCTCAAGCCTGTAAGGATGAAAGAATTGCGAAACATATGGCAGCATGTCTTGAGAAAAAGGATTCATGAAGGAAGAGAGTTTGAAAGCCTAGAGGGCTTTGATTTTGAGGGCATTCATCATTTCATGAGAAATGGACAAGATCAATGTTGTGATGATGTGAGCCTCTTTTCTTTGGAAGATTGTATCAGTTCAACAAGGAAAAGGAAAGATGCAGATAACAAACACGGCGAAAGAGAATTCGGAGATTCTTCTTCAACCAAGAAAGCTAGAGTGGTTTGGTCTGTGGATCTTCATCAGAAGTTTGTTCAAGCAGTGAATCAGATTGGACTTGATAAAGTTGGTCCCAAGAAAATTCTAGATTTGATGAATGTACCATGGCTTTCTAGAGAAAATGTTGCTAGTCACTTGCAGAAATACAGGCTCTACTTGAGTAGGTTGCAGAGGCAGAGAGATCAGAAGTGCTCCTCAAGTGGAACAAAGCATTCGGATTCGAATCCGAAAGATCCCGGAAGCTCTACACTTAAGAACTCTATGAACAAGCAACAAAATGTATTTTCAACTGACAACTTGAGATGTCCAAATAATGGATTACTGCAACTTCATGAAGCTGATTTCAGGGGAACTGTGTCAGAGCTTAATAACATTGTTCCTGGTCCAAATATGACAAATGTTTCACATATAGGCCTTGATCAAACCTTCTCATCTCTCAATTCAGAAGGAAACAGTGAAGTATTTGATTGCACTTTACCAACACAATACACTTGGAATCAAGTTCCCCAAAGGAAACTCCAAGATGACCCTAAATCACAATCAATTGCTTCAATGGATTCAAGTCCCTCTGCTGCAAGCTCAATAGCTTCTTCTGCAGTTGAAAACATTATTCCCGCTCAGTCCAAAAGCCTTATGGGGAATGATCTGGGCTTGAAAACACAGGAATTTGATGCCAGTCTCAGTCTCATTCCTGATCTGGAATTTTACCAGCAAAACTTACTCTGGGGTGGCGAGGGGGGCTTTTCGCCTTTGGATGAGGACTTGCATTTCTTTTTGCTACAAAGTGAATGCTATGATGATATGAACTTTGGTATGCACAACATAGAGATGCCAGAGTATTATTATGATCCAGGGCTTATTGCTGATGTTCCAAACCATTTATTCTATGACTCAGCGGATTATTCACTAGTAGATCAAAGTCTATTCATAGCATGA 1563 0.4069 MENNGCLPCTTLREGFPAGLRVLVVDDDPTWLKILEKMLKKCSYQVTTCCLATEALKKLRERKDAFDIVISDVNMPDMNGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPVRMKELRNIWQHVLRKRIHEGREFESLEGFDFEGIHHFMRNGQDQCCDDVSLFSLEDCISSTRKRKDADNKHGEREFGDSSSTKKARVVWSVDLHQKFVQAVNQIGLDKVGPKKILDLMNVPWLSRENVASHLQKYRLYLSRLQRQRDQKCSSSGTKHSDSNPKDPGSSTLKNSMNKQQNVFSTDNLRCPNNGLLQLHEADFRGTVSELNNIVPGPNMTNVSHIGLDQTFSSLNSEGNSEVFDCTLPTQYTWNQVPQRKLQDDPKSQSIASMDSSPSAASSIASSAVENIIPAQSKSLMGNDLGLKTQEFDASLSLIPDLEFYQQNLLWGGEGGFSPLDEDLHFFLLQSECYDDMNFGMHNIEMPEYYYDPGLIADVPNHLFYDSADYSLVDQSLFIA 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211478g00041 520 SUPERFAMILY Homeodomain-like 205 264 IPR009057 -
Stsc211478g00041 520 PANTHER TWO-COMPONENT RESPONSE REGULATOR 20 306 IPR045279 GO:0009736
Stsc211478g00041 520 ProSiteProfiles Response regulatory domain profile. 21 136 IPR001789 GO:0000160
Stsc211478g00041 520 Gene3D - 203 266 - -
Stsc211478g00041 520 SUPERFAMILY CheY-like 19 145 IPR011006 -
Stsc211478g00041 520 Pfam Myb-like DNA-binding domain 209 259 IPR001005 -
Stsc211478g00041 520 FunFam Two-component response regulator 203 266 - -
Stsc211478g00041 520 CDD REC_typeB_ARR-like 22 136 - -
Stsc211478g00041 520 Gene3D - 20 158 - -
Stsc211478g00041 520 SMART REC_2 20 132 IPR001789 GO:0000160
Stsc211478g00041 520 MobiDBLite consensus disorder prediction 269 296 - -
Stsc211478g00041 520 Pfam Response regulator receiver domain 22 131 IPR001789 GO:0000160
Stsc211478g00041 520 MobiDBLite consensus disorder prediction 378 399 - -
Stsc211478g00041 520 NCBIfam myb-like DNA-binding domain, SHAQKYF class 207 260 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211478g00041 Stsc-Chr211478 195289 197494 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211478g00041 16 273 Response Regulator Gene Family AT2G25180 53.962 1.29e-81 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Stsc211478g00041 Response_reg 2.2e-24 CL0304