Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211478g00040 ATGGTGCGAATACAACCCAATAGTTCTTTCAGAGAATCTCTCAAGGCTCTTGAAGATGATATCCAACATGCCAACACACTGGCATCAGCACTCCCTAGAGATTATAATGGGAGCTATATCCAAATGAAATTATGTTACAGCCCTTTTGCTCCTCTTTTCTTGTCATTGATTGAGTGGTTGGATTTTAGTTGCACAGATGATATTCCCCATTGTTTGGGCTTACTCCACATACTTATATCCAATGTATACATTGATGGAATAATGCCATCTATTTCCTCAAAAGAAAGGATAGCTTCTCTAAGAGAATTCTATGCTGTAATATACCCTTCGCTCCGATTACTCGAAGGCGAGTTCAATGTGTCCAGAATCAGAGAACATAGAAGCAGTTGCAGCCAAATTGTGAGCAGAAAGAGGCTTGAAAAGTTTATTGATGAAGATCAAGAGGGAGATGATGAATGTGACATATGCATGGAGAAGAGCAGGAAGATGGTGCTTCCTAATTGTGTTCATTCCTTGTGCATAAGCTGCTTCCATGATTGGTATTTGAGATCAGAATCATGTCCATTTTGCCGTGGGAGCCTGAAAAGGGTTACTTCTACAGATTTATGGGAGGTTATTGGAGACAGTGATGTAATTGACAGAGCTACACTTGCAATGGATAATATAAGACGTTTCTACCTTTTCATGGAAACTCTGCCACTTAATATCCCTGAAGCACATGTCTATGCATTTAACTACATGCTATGA 747 0.3963 MVRIQPNSSFRESLKALEDDIQHANTLASALPRDYNGSYIQMKLCYSPFAPLFLSLIEWLDFSCTDDIPHCLGLLHILISNVYIDGIMPSISSKERIASLREFYAVIYPSLRLLEGEFNVSRIREHRSSCSQIVSRKRLEKFIDEDQEGDDECDICMEKSRKMVLPNCVHSLCISCFHDWYLRSESCPFCRGSLKRVTSTDLWEVIGDSDVIDRATLAMDNIRRFYLFMETLPLNIPEAHVYAFNYML 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211478g00040 248 SMART ring_2 153 190 IPR001841 -
Stsc211478g00040 248 PANTHER RING FINGER PROTEIN 41, 151 8 244 - -
Stsc211478g00040 248 Pfam Zinc finger, C3HC4 type (RING finger) 150 196 - -
Stsc211478g00040 248 ProSiteProfiles Zinc finger RING-type profile. 153 191 IPR001841 -
Stsc211478g00040 248 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 202 IPR013083 -
Stsc211478g00040 248 SUPERFAMILY RING/U-box 140 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211478g00040 Stsc-Chr211478 190088 191677 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211478g00040 144 195 C3H Transcription Factor Family AT5G01960 34.615 1.94e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211478g00040 - - gmx:100805014 355.525