Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211478g00039 ATGTACGGATTGCTTCAAAGACTGACAGCAACTGTTGTAAATGCATTGCGATCGGCGTCTGCTGAAAGTCTGCTGATGAATGAAGGTGATCCTTGTGTTCCAACTCCCTGGGATTGGATAAATTGTAGTGCCACTACACCTCCAAGAATTTCAAAAATAGTTCTATCAAGAAGGAATGTGACCGGTGAAATCCCACCTGAACTGAACAACATGAATGCTTTGACAGAGTTGTGGTTAGATGGAAACTCACTTACAGGAACACTACCTGACATAAGCAATCTTATAAATCTAAAGATTGTGCATTTAGAGAACAACAAATTGACTGGTCCTCTACCATCTTACCTGGGTAGTTTGCCGAGTTTACAAGCACTGTTCATACAGAACAATTTATTTAGTGGGGAAATACCAGCCAGATTATTATCTGGAAAAATTGTTTTCAGCTATGATGGTAACATTGGACTATACAGGGGGAGCAAGAAGCATTTCAAGTTAATACTGGGAATTTCAATTGGAGTATTAGCAATTCTATTACTATTGTTCTTAGGTACTTTAGTACTAGTGCTGTGGAGAAAGAAATCTCAAACAAGACAAAAAGCAGGTGTTTCTGCACACAATAGCACTAAACCTTCAACTGCACATTCATTGGTTCGAGGGAACTTAAAGGATGAAGGTACCACTTGCTATATAGCACTTGCAGATTTGAAAGAAGCTACTGATGACTTTTCGAAGAAAATTGGCAAAGGAAGCTTTGGATCTGTTTATTATGGGAGAATGAAAGATGGAAAAGAGGTTGCAGTTAAGACTATGACTGATTCATCCAGCCATGGGAACCACCAATTTGTTAATGAGGTAGCCCTCTTATCAAGAATTCATCACAGAAACTTGGTTCCTCTGATTGGATACTGTGAAGAAGAATATCAGCATATTCTGGTTTATGAGTATATGCACAATGGCACTTTAAGGGATCACCTTCACGAACCTTCCAAGCAAAAGAAATTAGACTGGTTAGCTCGTCTTCGCATTGCAGAAGATGCAGCCAAAGGTCTTGAATACTTGCATACAGGATGCAATCCCAGTATCATTCACCGAGATGTAAAGACGAGCAATATTCTTATAGACATCAATATGAGAGCAAAAGTATCAGATTTTGGACTCTCTAGGCTAGCCGAAGAAGATTTAACTCACATATCAAGCATTGCAAGGGGAACCATAGGTTACCTCGATCCTGAGTACTATGCAAATCAACAGTTGACAGAAAAGAGTGATGTGTACAGTTTTGGAGTTGTTCTGCTGGAACTGATATCCGGAAGAAAGCCTGTGTCACCAGAAGATTATGGTGATGATATGAATATTGTTCACTGGGCAAGACCTTTAATCCGAAAAGGCGATGTGATGAGTATGATTGACCCTTGCATAGCAGGGAATGCCAAGATTGAATCCATTTGGAGGGTTGTTGAGATTGCAATGCAATGTGTGCAGCAGCATGGTGCATCAAGGCCAAGGATGCAAGAAGTCATTTTGGCTATACAAGATGCTACCAAGATTGAAATAGAAGCACAAAATAAGCTAAAATCATCATCATCACCATCAACTTCAAGAAAACCAGAGTCTTCCAGGAAAACTTTACTCACAAGCTTTCTTGAAATTGAGAGCCCAGACTTCTCAAGTGGTTGCCTCCCATCAGCAAGATAA 1692 0.3989 MYGLLQRLTATVVNALRSASAESLLMNEGDPCVPTPWDWINCSATTPPRISKIVLSRRNVTGEIPPELNNMNALTELWLDGNSLTGTLPDISNLINLKIVHLENNKLTGPLPSYLGSLPSLQALFIQNNLFSGEIPARLLSGKIVFSYDGNIGLYRGSKKHFKLILGISIGVLAILLLLFLGTLVLVLWRKKSQTRQKAGVSAHNSTKPSTAHSLVRGNLKDEGTTCYIALADLKEATDDFSKKIGKGSFGSVYYGRMKDGKEVAVKTMTDSSSHGNHQFVNEVALLSRIHHRNLVPLIGYCEEEYQHILVYEYMHNGTLRDHLHEPSKQKKLDWLARLRIAEDAAKGLEYLHTGCNPSIIHRDVKTSNILIDINMRAKVSDFGLSRLAEEDLTHISSIARGTIGYLDPEYYANQQLTEKSDVYSFGVVLLELISGRKPVSPEDYGDDMNIVHWARPLIRKGDVMSMIDPCIAGNAKIESIWRVVEIAMQCVQQHGASRPRMQEVILAIQDATKIEIEAQNKLKSSSSPSTSRKPESSRKTLLTSFLEIESPDFSSGCLPSAR 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211478g00039 563 Gene3D Ribonuclease Inhibitor 5 146 IPR032675 -
Stsc211478g00039 563 SUPERFAMILY L domain-like 34 139 - -
Stsc211478g00039 563 Gene3D Phosphorylase Kinase; domain 1 201 314 - -
Stsc211478g00039 563 ProSitePatterns Serine/Threonine protein kinases active-site signature. 360 372 IPR008271 GO:0004672|GO:0006468
Stsc211478g00039 563 Pfam Protein tyrosine and serine/threonine kinase 241 506 IPR001245 GO:0004672|GO:0006468
Stsc211478g00039 563 ProSiteProfiles Protein kinase domain profile. 239 513 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211478g00039 563 Gene3D Transferase(Phosphotransferase) domain 1 315 533 - -
Stsc211478g00039 563 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 45 135 - -
Stsc211478g00039 563 ProSitePatterns Protein kinases ATP-binding region signature. 245 267 IPR017441 GO:0005524
Stsc211478g00039 563 FunFam serine/threonine-protein kinase PBS1-like 210 314 - -
Stsc211478g00039 563 PANTHER OS07G0107800 PROTEIN-RELATED 22 112 - -
Stsc211478g00039 563 SMART serkin_6 239 492 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211478g00039 563 SUPERFAMILY Protein kinase-like (PK-like) 228 506 IPR011009 -
Stsc211478g00039 563 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 315 522 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211478g00039 Stsc-Chr211478 183557 187969 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211478g00039 7 563 Receptor kinase-like Gene Family AT1G67720 67.023 0.0 715
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Stsc211478g00039 PK_Tyr_Ser-Thr 2.1e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211478g00039 - - gmx:100809222 839.721