Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211478g00038 ATGTATGCCACTGATTATGAGGATAATTACTTCTTGAAAGTAGCTGCAAGAATCAATTTTGGTGCTCCAAGTGAGGCATCTCTCAGGTACCCTGATGATCCATATGATAGAATTTGGGATTCTGATCTTGCTAGAAGGCAAAATTTTCTTGTAGGGGTGGCACCTGGAACAGAGAGAATTAGTACTACAAAGAACATAGATATAGGGACAAGAGAGTATCCACCTGTTAGAGTTATGCAAACTGCAGTTGTTGGCACAAAAGGTGTACTTAGTTATAGGTTGAATTTAGAAGATTTCCCTGCCAATGCTCGCGCATATGCATATTTCGCGGAGATTGAAGATCTTGGTAAGAATGAGGTTAGGAAATTCAAGTTAAAGCAGCCTTACATACCTGACTATAGCAATGCAGTTGTTAACATTGCTGAGAATGTCAATGGTAGCTACATTCTTTATGAACCAAGTTATATGAATGTGAGTCTGGATTTTGTTCTGTCATTTGAATTTGTTGAGACCGCGGATTCTACTCGAGGACCTCTCCTTAATGCAATGGAAATAAGCAAATATGTACGGATTGCTTCAAAGACTGACAGGCAAGATTCAACTGTTGTAAATGCATTGCGATCGGCGTCTGCTGAAAGTCTGCTGATGAATGAAGGTGATCCTTGTGTTCCAACTCCCTGGGATTGGATAAATTGTAGTGCCACTACACCTCCAAGAATTTCAAAAATAGTTCTATCAAGAAGGAATGTGACCGGTGAAATCCCACCTGAACTGAACAACATGAATGCTTTGACAGAGTTGTGGTTAGATGGAAACTCACTTACAGGAACACTACCTGACATAAGCAATCTTATAAATCTAAAGATTGTGCATTTAGAGAACAACAAATTGACTGGTCCTCTACCATCTTACCTGGGTAGTTTGCCGAGTTTACAAGCACTGTTCATACAGAACAATTTATTTAGTGGGGAAATACCAGCCAGATTATTATCTGGAAAAATTGTTTTCAGCTATGATGGTAACATTGGACTATACAGGGGGAGCAAGAAGCATTTCAAGTTAATACTGGGAATTTCAATTGGAGTATTAGCAATTCTATTACTATTGTTCTTAGGTACTTTAGTACTAGTGCTGTGGAGAAAGAAATCTCAAACAAGACAAAAAGGTGTTTCTGCACACAATAGCACTAAACCTTCAACTGCACATTCATTGGTTCGAGGGAACTTAAAGGATGAAGGTACCACTTGCTATATAGCACTTGCAGATTTGAAAGAAGCTACTGATGACTTTTCGAAGAAAATTGGCAAAGGAAGCTTTGGATCTGTTTATTATGGGAGAATGAAAGATGGAAAAGAGGTTGCAGTTAAGACTATGACTGATTCATCCAGCCATGGGAACCACCAATTTGTTAATGAGGTAGCCCTCTTATCAAGAATTCATCACAGAAACTTGGTTCCTCTGATTGGATACTGTGAAGAAGAATATCAGCATATTCTGGTTTATGAGTATATGCACAATGGCACTTTAAGGGATCACCTTCACGAACCTTCCAAGCAAAAGAAATTAGACTGGTTAGCTCGTCTTCGCATTGCAGAAGATGCAGCCAAAGGTCTTGAATACTTGCATACAGGATGCAATCCCAGTATCATTCACCGAGATGTAAAGACGAGCAATATTCTTATAGACATCAATATGAGAGCAAAAGTATCAGATTTTGGACTCTCTAGGCTAGCCGAAGAAGATTTAACTCACATATCAAGCATTGCAAGGGGAACCATAGGTTACCTCGATCCTGAGTAA 1800 0.3917 MYATDYEDNYFLKVAARINFGAPSEASLRYPDDPYDRIWDSDLARRQNFLVGVAPGTERISTTKNIDIGTREYPPVRVMQTAVVGTKGVLSYRLNLEDFPANARAYAYFAEIEDLGKNEVRKFKLKQPYIPDYSNAVVNIAENVNGSYILYEPSYMNVSLDFVLSFEFVETADSTRGPLLNAMEISKYVRIASKTDRQDSTVVNALRSASAESLLMNEGDPCVPTPWDWINCSATTPPRISKIVLSRRNVTGEIPPELNNMNALTELWLDGNSLTGTLPDISNLINLKIVHLENNKLTGPLPSYLGSLPSLQALFIQNNLFSGEIPARLLSGKIVFSYDGNIGLYRGSKKHFKLILGISIGVLAILLLLFLGTLVLVLWRKKSQTRQKGVSAHNSTKPSTAHSLVRGNLKDEGTTCYIALADLKEATDDFSKKIGKGSFGSVYYGRMKDGKEVAVKTMTDSSSHGNHQFVNEVALLSRIHHRNLVPLIGYCEEEYQHILVYEYMHNGTLRDHLHEPSKQKKLDWLARLRIAEDAAKGLEYLHTGCNPSIIHRDVKTSNILIDINMRAKVSDFGLSRLAEEDLTHISSIARGTIGYLDPE 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211478g00038 599 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 235 325 - -
Stsc211478g00038 599 SUPERFAMILY L domain-like 224 329 - -
Stsc211478g00038 599 ProSitePatterns Serine/Threonine protein kinases active-site signature. 549 561 IPR008271 GO:0004672|GO:0006468
Stsc211478g00038 599 SUPERFAMILY Protein kinase-like (PK-like) 417 599 IPR011009 -
Stsc211478g00038 599 FunFam Os07g0541700 protein 504 593 - -
Stsc211478g00038 599 Gene3D Phosphorylase Kinase; domain 1 390 503 - -
Stsc211478g00038 599 Pfam Protein tyrosine and serine/threonine kinase 430 596 IPR001245 GO:0004672|GO:0006468
Stsc211478g00038 599 ProSiteProfiles Protein kinase domain profile. 428 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211478g00038 599 Gene3D Transferase(Phosphotransferase) domain 1 504 599 - -
Stsc211478g00038 599 Gene3D Ribonuclease Inhibitor 194 336 IPR032675 -
Stsc211478g00038 599 SMART serkin_6 428 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211478g00038 599 Pfam Malectin-like domain 1 187 IPR024788 -
Stsc211478g00038 599 ProSitePatterns Protein kinases ATP-binding region signature. 434 456 IPR017441 GO:0005524
Stsc211478g00038 599 FunFam serine/threonine-protein kinase PBS1-like 399 503 - -
Stsc211478g00038 599 PANTHER OS07G0107800 PROTEIN-RELATED 279 599 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211478g00038 Stsc-Chr211478 183493 187329 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211478g00038 1 599 Receptor kinase-like Gene Family AT1G67720 69.934 0.0 853
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Stsc211478g00038 Malectin_like 2.5e-36 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211478g00038 - - aprc:113850330 958.362