Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211478g00037 ATGCAAACTGCAGTTGTTGGCACAAAAGGTGTACTTAGTTATAGGTTGAATTTAGAAGATTTCCCTGCCAATGCTCGCGCATATGCATATTTCGCGGAGATTGAAGATCTTGGTAAGAATGAGGTTAGGAAATTCAAGTTAAAGCAGCCTTACATACCTGACTATAGCAATGCAGTTGTTAACATTGCTGAGAATGTCAATGGTAGCTACATTCTTTATGAACCAAGTTATATGAATGTGAGTCTGGATTTTGTTCTGTCATTTGAATTTGTTGAGACCGCGGATTCTACTCGAGGACCTCTCCTTAATGCAATGGAAATAAGCAAATATGTACGGATTGCTTCAAAGACTGACAGGCAAGATTCAACTGTTGTAAATGCATTGCGATCGGCGTCTGCTGAAAGTCTGCTGATGAATGAAGGTGATCCTTGTGTTCCAACTCCCTGGGATTGGATAAATTGTAGTGCCACTACACCTCCAAGAATTTCAAAAATAGTTCTATCAAGAAGGAATGTGACCGGTGAAATCCCACCTGAACTGAACAACATGAATGCTTTGACAGAGTTGTGGTTAGATGGAAACTCACTTACAGGAACACTACCTGACATAAGCAATCTTATAAATCTAAAGATTGTGCATTTAGAGAACAACAAATTGACTGGTCCTCTACCATCTTACCTGGGTAGTTTGCCGAGTTTACAAGCACTGTTCATACAGAACAATTTATTTAGTGGGGAAATACCAGCCAGATTATTATCTGGAAAAATTGTTTTCAGCTATGATGGTAACATTGGACTATACAGGGGGAGCAAGAAGCATTTCAAGTTAATACTGGGAATTTCAATTGGAGTATTAGCAATTCTATTACTATTGTTCTTAGGTACTTTAGTACTAGTGCTGTGGAGAAAGAAATCTCAAACAAGACAAAAAGGTGTTTCTGCACACAATAGCACTAAACCTTCAACTGCACATTCATTGGTTCGAGGGAACTTAAAGGATGAAGGTACCACTTGCTATATAGCACTTGCAGATTTGAAAGAAGCTACTGATGACTTTTCGAAGAAAATTGGCAAAGGAAGCTTTGGATCTGTTTATTATGGGAGAATGAAAGATGGAAAAGAGGTTGCAGTTAAGACTATGACTGATTCATCCAGCCATGGGAACCACCAATTTGTTAATGAGGTAGCCCTCTTATCAAGAATTCATCACAGAAACTTGGTTCCTCTGATTGGATACTGTGAAGAAGAATATCAGCATATTCTGGTTTATGAGTATATGCACAATGGCACTTTAAGGGATCACCTTCACGAACCTTCCAAGCAAAAGAAATTAGACTGGTTAGCTCGTCTTCGCATTGCAGAAGATGCAGCCAAAGGTCTTGAATACTTGCATACAGGATGCAATCCCAGTATCATTCACCGAGATGTAAAGACGAGCAATATTCTTATAGACATCAATATGAGAGCAAAAGTATCAGATTTTGGACTCTCTAGGCTAGCCGAAGAAGATTTAACTCACATATCAAGCATTGCAAGGGGAACCATAGGTTACCTCGATCCTGAGTACTATGCAAATCAACAGTTGACAGAAAAGAGTGATGTGTACAGTTTTGGAGTTGTTCTGCTGGAACTGATATCCGGAAGAAAGCCTGTGTCACCAGAAGATTATGGTGATGATATGAATATTGTTCACTGGGCAAGACCTTTAATCCGAAAAGGCGATGTGATGAGTATGATTGACCCTTGCATAGCAGGGAATGCCAAGATTGAATCCATTTGGAGGGTTGTTGAGATTGCAATGCAATGTGTGCAGCAGCATGGTGCATCAAGGCCAAGGATGCAAGAAGTCATTTTGGCTATACAAGATGCTACCAAGATTGAAATAGAAGCACAAAATAAGCTAAAATCATCATCATCACCATCAACTTCAAGAAAACCAGAGTCTTCCAGGAAAACTTTACTCACAAGCTTTCTTGAAATTGAGAGCCCAGACTTCTCAAGTGGTTGCCTCCCATCAGCAAGATAA 2025 0.396 MQTAVVGTKGVLSYRLNLEDFPANARAYAYFAEIEDLGKNEVRKFKLKQPYIPDYSNAVVNIAENVNGSYILYEPSYMNVSLDFVLSFEFVETADSTRGPLLNAMEISKYVRIASKTDRQDSTVVNALRSASAESLLMNEGDPCVPTPWDWINCSATTPPRISKIVLSRRNVTGEIPPELNNMNALTELWLDGNSLTGTLPDISNLINLKIVHLENNKLTGPLPSYLGSLPSLQALFIQNNLFSGEIPARLLSGKIVFSYDGNIGLYRGSKKHFKLILGISIGVLAILLLLFLGTLVLVLWRKKSQTRQKGVSAHNSTKPSTAHSLVRGNLKDEGTTCYIALADLKEATDDFSKKIGKGSFGSVYYGRMKDGKEVAVKTMTDSSSHGNHQFVNEVALLSRIHHRNLVPLIGYCEEEYQHILVYEYMHNGTLRDHLHEPSKQKKLDWLARLRIAEDAAKGLEYLHTGCNPSIIHRDVKTSNILIDINMRAKVSDFGLSRLAEEDLTHISSIARGTIGYLDPEYYANQQLTEKSDVYSFGVVLLELISGRKPVSPEDYGDDMNIVHWARPLIRKGDVMSMIDPCIAGNAKIESIWRVVEIAMQCVQQHGASRPRMQEVILAIQDATKIEIEAQNKLKSSSSPSTSRKPESSRKTLLTSFLEIESPDFSSGCLPSAR 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211478g00037 674 ProSiteProfiles Protein kinase domain profile. 350 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211478g00037 674 SUPERFAMILY Protein kinase-like (PK-like) 339 617 IPR011009 -
Stsc211478g00037 674 FunFam serine/threonine-protein kinase PBS1-like 321 425 - -
Stsc211478g00037 674 Gene3D Transferase(Phosphotransferase) domain 1 426 643 - -
Stsc211478g00037 674 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 157 253 - -
Stsc211478g00037 674 SUPERFAMILY L domain-like 146 251 - -
Stsc211478g00037 674 Gene3D Ribonuclease Inhibitor 116 257 IPR032675 -
Stsc211478g00037 674 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 426 633 - -
Stsc211478g00037 674 PANTHER OS07G0107800 PROTEIN-RELATED 201 623 - -
Stsc211478g00037 674 Pfam Protein tyrosine and serine/threonine kinase 352 617 IPR001245 GO:0004672|GO:0006468
Stsc211478g00037 674 Pfam Malectin-like domain 1 109 IPR024788 -
Stsc211478g00037 674 ProSitePatterns Protein kinases ATP-binding region signature. 356 378 IPR017441 GO:0005524
Stsc211478g00037 674 SMART serkin_6 350 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211478g00037 674 Gene3D Phosphorylase Kinase; domain 1 312 425 - -
Stsc211478g00037 674 ProSitePatterns Serine/Threonine protein kinases active-site signature. 471 483 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211478g00037 Stsc-Chr211478 183493 187969 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211478g00037 1 674 Receptor kinase-like Gene Family AT1G67720 69.764 0.0 922
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Stsc211478g00037 PK_Tyr_Ser-Thr 3.3e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211478g00037 - - gmx:100809222 1050.43