Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211478g00036 ATGTATGCCACTGATTATGAGGATAATTACTTCTTGAAAGTAGCTGCAAGAATCAATTTTGGTGCTCCAAGTGAGGCATCTCTCAGGTACCCTGATGATCCATATGATAGAATTTGGGATTCTGATCTTGCTAGAAGGCAAAATTTTCTTGTAGGGGTGGCACCTGGAACAGAGAGAATTAGTACTACAAAGAACATAGATATAGGGACAAGAGAGTATCCACCTGTTAGAGTTATGCAAACTGCAGTTGTTGGCACAAAAGGTGTACTTAGTTATAGGTTGAATTTAGAAGATTTCCCTGCCAATGCTCGCGCATATGCATATTTCGCGGAGATTGAAGATCTTGGTAAGAATGAGGTTAGGAAATTCAAGTTAAAGCAGCCTTACATACCTGACTATAGCAATGCAGTTGTTAACATTGCTGAGAATGTCAATGGTAGCTACATTCTTTATGAACCAAGTTATATGAATGTGAGTCTGGATTTTGTTCTGTCATTTGAATTTGTTGAGACCGCGGATTCTACTCGAGGACCTCTCCTTAATGCAATGGAAATAAGCAAATATGTACGGATTGCTTCAAAGACTGACAGGCAAGATTCAACTGTTGTAAATGCATTGCGATCGGCGTCTGCTGAAAGTCTGCTGATGAATGAAGGTGATCCTTGTGTTCCAACTCCCTGGGATTGGATAAATTGTAGTGCCACTACACCTCCAAGAATTTCAAAAATAGTTCTATCAAGAAGGAATGTGACCGGTGAAATCCCACCTGAACTGAACAACATGAATGCTTTGACAGAGTTGTGGTTAGATGGAAACTCACTTACAGGAACACTACCTGACATAAGCAATCTTATAAATCTAAAGATTGTGCATTTAGAGAACAACAAATTGACTGGTCCTCTACCATCTTACCTGGGTAGTTTGCCGAGTTTACAAGCACTGTTCATACAGAACAATTTATTTAGTGGGGAAATACCAGCCAGATTATTATCTGGAAAAATTGTTTTCAGCTATGATGGTAACATTGGACTATACAGGGGGAGCAAGAAGCATTTCAAGTTAATACTGGGAATTTCAATTGGAGTATTAGCAATTCTATTACTATTGTTCTTAGGTACTTTAGTACTAGTGCTGTGGAGAAAGAAATCTCAAACAAGACAAAAAGCAGGTGTTTCTGCACACAATAGCACTAAACCTTCAACTGCACATTCATTGGTTCGAGGGAACTTAAAGGATGAAGGTACCACTTGCTATATAGCACTTGCAGATTTGAAAGAAGCTACTGATGACTTTTCGAAGAAAATTGGCAAAGGAAGCTTTGGATCTGTTTATTATGGGAGAATGAAAGATGGAAAAGAGGTTGCAGTTAAGACTATGACTGATTCATCCAGCCATGGGAACCACCAATTTGTTAATGAGGTAGCCCTCTTATCAAGAATTCATCACAGAAACTTGGTTCCTCTGATTGGATACTGTGAAGAAGAATATCAGCATATTCTGGTTTATGAGTATATGCACAATGGCACTTTAAGGGATCACCTTCACGAACCTTCCAAGCAAAAGAAATTAGACTGGTTAGCTCGTCTTCGCATTGCAGAAGATGCAGCCAAAGGTCTTGAATACTTGCATACAGGATGCAATCCCAGTATCATTCACCGAGATGTAAAGACGAGCAATATTCTTATAGACATCAATATGAGAGCAAAAGTATCAGATTTTGGACTCTCTAGGCTAGCCGAAGAAGATTTAACTCACATATCAAGCATTGCAAGGGGAACCATAGGTTACCTCGATCCTGAGTACTATGCAAATCAACAGTTGACAGAAAAGAGTGATGTGTACAGTTTTGGAGTTGTTCTGCTGGAACTGATATCCGGAAGAAAGCCTGTGTCACCAGAAGATTATGGTGATGATATGAATATTGTTCACTGGGCAAGACCTTTAATCCGAAAAGGCGATGTGATGAGTATGATTGACCCTTGCATAGCAGGGAATGCCAAGATTGAATCCATTTGGAGGGTTGTTGAGATTGCAATGCAATGTGTGCAGCAGCATGGTGCATCAAGGCCAAGGATGCAAGAAGTCATTTTGGCTATACAAGATGCTACCAAGATTGAAATAGAAGCACAAAATAAGCTAAAATCATCATCATCACCATCAACTTCAAGAAAACCAGAGTCTTCCAGGAAAACTTTACTCACAAGCTTTCTTGAAATTGAGAGCCCAGACTTCTCAAGTGGTTGCCTCCCATCAGCAAGATAA 2262 0.3966 MYATDYEDNYFLKVAARINFGAPSEASLRYPDDPYDRIWDSDLARRQNFLVGVAPGTERISTTKNIDIGTREYPPVRVMQTAVVGTKGVLSYRLNLEDFPANARAYAYFAEIEDLGKNEVRKFKLKQPYIPDYSNAVVNIAENVNGSYILYEPSYMNVSLDFVLSFEFVETADSTRGPLLNAMEISKYVRIASKTDRQDSTVVNALRSASAESLLMNEGDPCVPTPWDWINCSATTPPRISKIVLSRRNVTGEIPPELNNMNALTELWLDGNSLTGTLPDISNLINLKIVHLENNKLTGPLPSYLGSLPSLQALFIQNNLFSGEIPARLLSGKIVFSYDGNIGLYRGSKKHFKLILGISIGVLAILLLLFLGTLVLVLWRKKSQTRQKAGVSAHNSTKPSTAHSLVRGNLKDEGTTCYIALADLKEATDDFSKKIGKGSFGSVYYGRMKDGKEVAVKTMTDSSSHGNHQFVNEVALLSRIHHRNLVPLIGYCEEEYQHILVYEYMHNGTLRDHLHEPSKQKKLDWLARLRIAEDAAKGLEYLHTGCNPSIIHRDVKTSNILIDINMRAKVSDFGLSRLAEEDLTHISSIARGTIGYLDPEYYANQQLTEKSDVYSFGVVLLELISGRKPVSPEDYGDDMNIVHWARPLIRKGDVMSMIDPCIAGNAKIESIWRVVEIAMQCVQQHGASRPRMQEVILAIQDATKIEIEAQNKLKSSSSPSTSRKPESSRKTLLTSFLEIESPDFSSGCLPSAR 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211478g00036 753 Pfam Protein tyrosine and serine/threonine kinase 431 696 IPR001245 GO:0004672|GO:0006468
Stsc211478g00036 753 SUPERFAMILY L domain-like 224 329 - -
Stsc211478g00036 753 SMART serkin_6 429 682 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211478g00036 753 SUPERFAMILY Protein kinase-like (PK-like) 418 696 IPR011009 -
Stsc211478g00036 753 Pfam Malectin-like domain 1 187 IPR024788 -
Stsc211478g00036 753 Gene3D Phosphorylase Kinase; domain 1 391 504 - -
Stsc211478g00036 753 Gene3D Ribonuclease Inhibitor 194 335 IPR032675 -
Stsc211478g00036 753 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 235 331 - -
Stsc211478g00036 753 ProSitePatterns Serine/Threonine protein kinases active-site signature. 550 562 IPR008271 GO:0004672|GO:0006468
Stsc211478g00036 753 PANTHER OS07G0107800 PROTEIN-RELATED 279 702 - -
Stsc211478g00036 753 ProSitePatterns Protein kinases ATP-binding region signature. 435 457 IPR017441 GO:0005524
Stsc211478g00036 753 FunFam serine/threonine-protein kinase PBS1-like 400 504 - -
Stsc211478g00036 753 ProSiteProfiles Protein kinase domain profile. 429 703 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211478g00036 753 Gene3D Transferase(Phosphotransferase) domain 1 505 722 - -
Stsc211478g00036 753 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 505 712 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211478g00036 Stsc-Chr211478 183493 187969 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211478g00036 1 753 Receptor kinase-like Gene Family AT1G67720 70.013 0.0 1045
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Stsc211478g00036 PK_Tyr_Ser-Thr 4.1e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211478g00036 - - gmx:100809222 1190.64