Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211478g00035 ATGAAATTGGTTTACAATCACTTGGCTCCTCTCCTTTTGTTGTTCTTGCAATGGATGGATTGTTCTTGTACATGCTTTCTACATAGTTATCTCAACTTGTTCCACATACATGTGTACAAAGTTCATAATGATGGTAGATCAAGCATAACTTCTCATGGAAGGAAGGCAACCATAAGAGACTTTTATGCCGTTATTCTGCCGTCTCTCCAGAGGCTCCATGGAAGCTTGGATAAGTTGGAGATTTGTAAGGAAGGACACTCTGGCAACAATGGCAAGAAGATGATTGAAGGTGACAGGAAACTCATCAATGTTGATTTGGAACGAGAAGATGAATGCGGAATATGCTTAGAGCCATGCACCAAAATGGTTTTGCCTAATTGCTGTCATGCCATGTGTATCAAATGCTACCGCAAGTGGAACACGCGGTCTGAGTCATGCCCGTTTTGCCGCGGCAGCTTGAGGAGAGTGAACTCTGAGGACCTCTGGGTTCTGACCTGCAATGAGGATGTTGTTGATGCCGAAACTGTTTCAAAGGAGGACTTGCTGCGCTTCCATCTTTATATCAATAGCCTACCTAAAGATCACCCTGATGCAGTATTTTTAATGTATTATGAATACTTAATTTGA 627 0.4226 MKLVYNHLAPLLLLFLQWMDCSCTCFLHSYLNLFHIHVYKVHNDGRSSITSHGRKATIRDFYAVILPSLQRLHGSLDKLEICKEGHSGNNGKKMIEGDRKLINVDLEREDECGICLEPCTKMVLPNCCHAMCIKCYRKWNTRSESCPFCRGSLRRVNSEDLWVLTCNEDVVDAETVSKEDLLRFHLYINSLPKDHPDAVFLMYYEYLI 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211478g00035 208 SMART ring_2 112 149 IPR001841 -
Stsc211478g00035 208 Pfam Ring finger domain 110 150 IPR001841 -
Stsc211478g00035 208 SUPERFAMILY RING/U-box 102 154 - -
Stsc211478g00035 208 FunFam RING/U-box superfamily protein 93 159 - -
Stsc211478g00035 208 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 161 IPR013083 -
Stsc211478g00035 208 ProSitePatterns Zinc finger RING-type signature. 127 136 IPR017907 -
Stsc211478g00035 208 ProSiteProfiles Zinc finger RING-type profile. 112 150 IPR001841 -
Stsc211478g00035 208 PANTHER RING FINGER PROTEIN 41, 151 1 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211478g00035 Stsc-Chr211478 178603 180111 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211478g00035 40 161 RAD5 or RAD16-like Gene Family AT1G50410 27.972 2.81e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211478g00035 - - gmx:100790422 402.134