Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211478g00033 ATGGGTCGCCGTAAGATCGAGATTAAGATGGTAAACAACACCAACACAAGGCAGGTTACATTCTCCAAACGTCGAACCGGTCTTTTCAAGAAAGCCAACGAACTTTCTATTCTCTGCGGATCCGAAGTTGCTATTGTCGTATTCTCCCCAGGAAACAAGCCTTACTCTTTCGCCCATCCCACTGTCGAGGCTGTTGCCGCCAAGTTCCTCATCCAAAACCCTCGTCGTGGAGCTGACGACCACGAAAACAATAGCGACGATGGTGATGATGATGACGATGGCGATGCTGATACAACCGCTTTGGACCATTTGTTCAAGGAAATTGTGGAACAGGTGCGCGTGGAAGAAAAAGAAGGCGCTGCGCATGACAAGGAAATCAAAGAGGTTGTTGGACTGGAAGGTAAATGGTGTGATGAGATTGGTGAATTGAGTGAACTGAGAAGGAGAGTGAGGGAGCGTCTTGCCATGTTGGAGACGGTTGAGTCCATGATGCTTCTTTCAGAGGAACCTGTGGTGATGAAAAATACCGTGAATAACGCTGTTCCCAAAATCAAGAAGAGAAGAACAATCAAGTAA 576 0.4705 MGRRKIEIKMVNNTNTRQVTFSKRRTGLFKKANELSILCGSEVAIVVFSPGNKPYSFAHPTVEAVAAKFLIQNPRRGADDHENNSDDGDDDDDGDADTTALDHLFKEIVEQVRVEEKEGAAHDKEIKEVVGLEGKWCDEIGELSELRRRVRERLAMLETVESMMLLSEEPVVMKNTVNNAVPKIKKRRTIK 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211478g00033 191 PANTHER MADS BOX PROTEIN 3 153 - -
Stsc211478g00033 191 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
Stsc211478g00033 191 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Stsc211478g00033 191 CDD MADS_MEF2_like 2 70 IPR033896 GO:0000977|GO:0045944
Stsc211478g00033 191 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Stsc211478g00033 191 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Stsc211478g00033 191 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Stsc211478g00033 191 SUPERFAMILY SRF-like 1 74 IPR036879 GO:0003677|GO:0046983
Stsc211478g00033 191 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Stsc211478g00033 191 FunFam Agamous-like MADS-box protein AGL62 13 79 - -
Stsc211478g00033 191 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Stsc211478g00033 191 MobiDBLite consensus disorder prediction 75 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211478g00033 Stsc-Chr211478 172950 173633 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211478g00033 1 167 Type I MADS-box Gene Family AT2G34440 42.541 4.92e-34 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Stsc211478g00033 SRF-TF 5.7e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211478g00033 - - adu:107481967 248.825