Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211478g00028 ATGAAGCTATCTTCAGCTGATTTTAATCCTCCACCACAGGAAGGAGAAAAGCGCGTCTTGGATTCAGAACTTTGGCATGCCTGTGCTGGTCCCCTTGTTTCTTTACCAGTTGTTGGAAGCCGGGTTGTGTACTTTCCACAAGGTCACAGTGAACAGGTTGCTGTATCAACCAACAGGGAAGTGGATGCCCAAATTCCTAACTATCCAAGCTTGCCTCCCCAACTGATTTGTCAACTTCATAATGTGACTATGCATGCTGATATTGAGACAGATGAAGTATATGCACAGATGACCTTGCAACCTCTGAATCCTCAAGAGCAGAAGGAAGCATACCTTCCAGCAGAGTTGGGCTCTCCAAGTAAACAGCCTACAAACTACTTTTGCAAAACTTTGACAGCCAGTGACACAAGCACTCATGGAGGGTTCTCTGTTCCTCGCCGTGCAGCTGAAAAAGTGTTTCCTCCTTTGGACTTCACCCAACAGCCTCCTGCTCAAGAGTTAATTGCAAGGGATTTGCATGGTAACGAATGGAAATTCAGACATATCTTTCGCGGCCAGCCCAAAAGGCATCTATTGACAACGGGATGGAGTGTCTTTGTCAGTGCTAAAAGACTTGTTGCTGGTGATGCTGTGCTGTTTATCTGGAATGAAAAGAATCAATTGCTTCTTGGCATTCGCCGTGCTAATCGACCACAACCTGTGATGCCTTCCTCAGTTTTGTCAAGTGATAGCATGCACTTGGGGCTTCTTGCTGCTGCAGCTCATGCAGCTGCAACAAATAGTCGATTCACCATTTTTTATAACCCACGTGCTTGCCCATCAGACTTCGTCATACCCTTGGCAAAGTATGTTAAAGCTGTGTATCATACTCGAGTTTCGGTGGGCATGCGCTTCAGAATGCTGTTTGAAACAGAAGAATCTAGTGTGCGGCGGTGGGTTGAAACTTGCCTTGTTTTAAGACCATGTTGCATATGA 975 0.4585 MKLSSADFNPPPQEGEKRVLDSELWHACAGPLVSLPVVGSRVVYFPQGHSEQVAVSTNREVDAQIPNYPSLPPQLICQLHNVTMHADIETDEVYAQMTLQPLNPQEQKEAYLPAELGSPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFTQQPPAQELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDAVLFIWNEKNQLLLGIRRANRPQPVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRACPSDFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRWVETCLVLRPCCI 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211478g00028 324 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Stsc211478g00028 324 SUPERFAMILY DNA-binding pseudobarrel domain 112 256 IPR015300 -
Stsc211478g00028 324 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 316 IPR044835 GO:0003677|GO:0006355|GO:0009725
Stsc211478g00028 324 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Stsc211478g00028 324 SMART B3_2 127 229 IPR003340 GO:0003677
Stsc211478g00028 324 Gene3D - 125 228 IPR015300 -
Stsc211478g00028 324 Pfam Auxin response factor 253 312 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Stsc211478g00028 324 FunFam Auxin response factor 125 229 - -
Stsc211478g00028 324 CDD B3_DNA 126 227 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211478g00028 Stsc-Chr211478 143554 145883 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211478g00028 1 315 B3 DNA Binding Superfamily AT1G30330 90.536 0.0 578
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Stsc211478g00028 B3 1.3e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211478g00028 - - gmx:100796447 596.66