Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211478g00025 ATGAATCAAAACCAGATTGAGCCACTACCTTTGCTAAGCAGCTTCCTTGGTTCTTCAACTTGTTCATCATCACTACTAAATCAAAATCTGAAACAAGTTCATTATAGCCAACAAGTGGAAGAAGATGTGACAGTGGCCTTGCACATTGGCCTCCCTGACAATTCCAATAATATCCCCACCAATCATCATAATATATTTGTGAACCATAATGTAGAACCTCTCCAAGCTGCAAATAATTACTGGATACCAACTGAAGAGCAGATTATAATTGGTTTCAGTCACTTCTCTTGTCCTGTTTGCCCTAAAACCTTCAACCGCTATAACAATCTTCAGATGCATCTATGGGGACATGGATCAGAATACAGAAGAGGGCCAGAGTCACTGAAAAGAACACATCCAAGGCCATTGTTGGAGATACCATGCTACTGCTGCAAAGGAGGGTGCAAGAACAACATAGAGCACCCAAGGGCCAAGCCACTAAAAGATTTCAGAACACTCCAAACACACTACAAGAGGAAGCATGGACCCAAACCCTTCTCATGCCGCAAGTGTGCTAAGACTCTTGCTGTTAAAGGTGACTGGAGAACTCATGAGAAGAACTGTGGGAAACGCTGGCTTTGTCTTTGTGGCTCTGACTTCAAACACAAGAGGTCTCTTAAGGATCATATCAAGGCTTTTGGCTTTGGTCACACTCCCTTCTCTTCTTCCTCTTCTTTATCTCATTAA 726 0.4256 MNQNQIEPLPLLSSFLGSSTCSSSLLNQNLKQVHYSQQVEEDVTVALHIGLPDNSNNIPTNHHNIFVNHNVEPLQAANNYWIPTEEQIIIGFSHFSCPVCPKTFNRYNNLQMHLWGHGSEYRRGPESLKRTHPRPLLEIPCYCCKGGCKNNIEHPRAKPLKDFRTLQTHYKRKHGPKPFSCRKCAKTLAVKGDWRTHEKNCGKRWLCLCGSDFKHKRSLKDHIKAFGFGHTPFSSSSSLSH 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211478g00025 241 ProSitePatterns Zinc finger C2H2 type domain signature. 97 117 IPR013087 -
Stsc211478g00025 241 SUPERFAMILY beta-beta-alpha zinc fingers 161 199 IPR036236 -
Stsc211478g00025 241 Gene3D Classic Zinc Finger 157 230 - -
Stsc211478g00025 241 FunFam Zinc finger protein WIP2 148 230 - -
Stsc211478g00025 241 ProSiteProfiles Zinc finger C2H2 type domain profile. 95 122 IPR013087 -
Stsc211478g00025 241 PANTHER ZINC FINGER PROTEIN WIP2 24 234 IPR043584 GO:0003700|GO:0010468
Stsc211478g00025 241 Gene3D Classic Zinc Finger 94 117 - -
Stsc211478g00025 241 SUPERFAMILY beta-beta-alpha zinc fingers 90 118 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211478g00025 Stsc-Chr211478 127529 128333 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211478g00025 1 236 C2H2 Transcription Factor Family AT1G34790 57.647 2.80e-97 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc211478g00025 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211478g00025 - - ccaj:109809318 373.244