Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211478g00019 ATGGTTTGTTATGCACGAAGTGCCGGTGAATGCTTGGGTTCTATAAGAAGAAATACAAAGCTTATGAATCTCAGAAATTGTTTGATTTTCCATTTGCCGCACCGCTCAATCAACGAAAAGATGTGGACAATCCTCTCTCATTCTCGTTGCGATTGTGCGTTGTGTGTGTCTGTTCCTACTTCCTACTTCCACCATACCATGTCAGGTGCTGCTGGGGCGGTTGCTTTACACACTTCAATGTGCAGCTTCTCATCCTCCCATACCCATCGACCAACATCAACTCCTATCAATTCTCACCAACCTAACACAAACATCCATCTCACTAGCCTCCTCCAAACTCACCCACTCTATCCTCTAACCAATGCAAGGCTCTCCCTTCAATTCAAAGAGAAAATCCTCTGCCTTGAGATCATGGGCGTTGATGCTGGCAAAGCATTGTCCCAGAACCCCGCCCTAACCACTGCTTCAATGGAATCCATTCAATCCATTATCTCCTTCCTTCTTTCCAAAGGCATCCTGCACAAGGACATTCCTAGGATCATTTCCATGTGCCCCAAGATTCTCACCTCTGACATCAATGCTGACCTTGACCCAGTTTTTGATTTTCTCTCACATGACCTCAGAGTCCCAGATCATAACTCTAGGAAGGTTATCAATAAGTGCCCATATTTGCTTACCGCCAGTGTTGTAGATCAGCTTAAGCCAACTTTGTTTTATCTTAGGAGATTTGGCTTCAAGGACTTGAAGGTTCTGGCTTATCAAGAACCTGTTCTGTTGGTCTCTTGTGTTGAGAAATCCTTAATCCCTAAGCTGAGGTATTTGGAGAGTTTGGGATTCTCAAAGGATGAGGTTAAGGATATGGTCTTGAGATGTCCATCATTGCTCACTTTCAACATTGAAGTTAATTTTCGGCCCAAGTTTGAGTATTTTGTTGGGGAAATGGGGAAGAAACTTAAGGAGCTGAAAGAGTTTCCCCAGTACTTTGCTTTTAGTTTGGAGAACAGGATAAAGCCTAGGCACATGGAGGCGGTGCAAAATGGTATCAATTTGCCTTTGTCACTGATGCTTGAAAGCACTGATCAAGAGTTTAGGGAGCTGATAAAGCAGGGGGGTGGATGA 1119 0.4406 MVCYARSAGECLGSIRRNTKLMNLRNCLIFHLPHRSINEKMWTILSHSRCDCALCVSVPTSYFHHTMSGAAGAVALHTSMCSFSSSHTHRPTSTPINSHQPNTNIHLTSLLQTHPLYPLTNARLSLQFKEKILCLEIMGVDAGKALSQNPALTTASMESIQSIISFLLSKGILHKDIPRIISMCPKILTSDINADLDPVFDFLSHDLRVPDHNSRKVINKCPYLLTASVVDQLKPTLFYLRRFGFKDLKVLAYQEPVLLVSCVEKSLIPKLRYLESLGFSKDEVKDMVLRCPSLLTFNIEVNFRPKFEYFVGEMGKKLKELKEFPQYFAFSLENRIKPRHMEAVQNGINLPLSLMLESTDQEFRELIKQGGG 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211478g00019 372 FunFam Transcription termination factor MTEF1, chloroplastic 203 370 - -
Stsc211478g00019 372 Gene3D Transcription termination factor 3, mitochondrial 205 369 IPR038538 -
Stsc211478g00019 372 PANTHER CGI-12 PROTEIN-RELATED 110 366 IPR003690 GO:0003690|GO:0006355
Stsc211478g00019 372 Pfam mTERF 216 363 IPR003690 GO:0003690|GO:0006355
Stsc211478g00019 372 Pfam mTERF 135 248 IPR003690 GO:0003690|GO:0006355
Stsc211478g00019 372 SMART mt_12 249 280 IPR003690 GO:0003690|GO:0006355
Stsc211478g00019 372 SMART mt_12 178 210 IPR003690 GO:0003690|GO:0006355
Stsc211478g00019 372 SMART mt_12 285 317 IPR003690 GO:0003690|GO:0006355
Stsc211478g00019 372 SMART mt_12 143 173 IPR003690 GO:0003690|GO:0006355
Stsc211478g00019 372 SMART mt_12 215 246 IPR003690 GO:0003690|GO:0006355
Stsc211478g00019 372 SMART mt_12 318 349 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211478g00019 Stsc-Chr211478 112812 114310 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Stsc211478g00019 mTERF 2.1e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211478g00019 K15031 - gmx:100788221 409.838