Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211478g00016 ATGACGTCACGTAGCAGCGGCAGCGGCAGCGGCAGCGGCGGCGGCGGCGGCGGAAGCGGCAGCCGTAGTAACGGGATGCGGGTGGGAAAATACGAGATGGGTCGGACACTTGGAGAGGGAAACTTCGCAAAGGTGAAGTTCGCGAGGAACGTGGAGACAGGAGAGAACGTGGCCATCAAGATCCTTGACAAAGAAAAAGTTCTCAAGCACAAGATGATAAGCCAGATAAAACGAGAAATATCAACAATGAAACTGGTTAGACACCCCAATATCATACGTTTGCATGAGGTGATGGCTAGCAAGACAAAGATATACATTGTGTTGGAACTTGTGACCGGCGGGGAACTGTTTGATAAAATTGCAAGCCAAGGGAGGATGAAAGAAGACGAAGCAAGGAAATATTTTCAGCAGCTTATATGTGCTGTGGATTACTGTCACAGTAGAGGTGTTTGCCACAGGGACTTGAAGCCTGAGAATTTGTTGCTGGGTGCTGACGGAGGGCTTAAAGTGTCAGATTTTGGATTGAGTGCACTGCCTCAACAAGTTCGAGAAGATGGGCTGCTTCACACGACATGTGGTACGCCAAATTATGTTGCTCCAGAGGTGATTAAAAATAAAGGCTATGATGGTGCAAAGGCTGATATCTGGTCATGTGGTGTTATTCTCTTTGTTTTGATGGCTGGTTATTTGCCCTTTGAAGACAACAACCTTATGAATTTATATAAAAAGATTTTCAATGCTCAGTACGAATGTCCTCCATGGTTTTCTTCAAGTGCAAAAAAACTAATCAAGAAAATCCTCGATCCCAATCCTGCTACGCGGATGACAATTCCTGAGTTAATTGAGAATGAATGGTTCAAGAAGGGGTATAAACCTCCTCGATTTGAACAGGAAGATGTCAGTCTTGATGATATAGATGCTATTTTCAGTGAAGCAACGGATTCACACAATCTTGTTGTGGAAAGGCGAGAAGAGGAGCCAGTGGCACCTGTGACTATGAATGCCTTTGAGCTTATCTCTACATCTCAGGGCCTCAACCTCAGAAATCTTTTCCAGAAGCAGATGGGACTTGTTAAAAGGGAAACAAGATTCACATCCAAATGTTCGGCAAATGAGATAATCTCGAAAATTGAGGAGGCTGCAGTGCCTCTGGGTTTTGATGTTAAGAAGAACAACACTAAGTTGAAGCTTCAAGGGGAAAAAAGCGGACGAAAAGGTCATCTAGCAGTATCAACTGAGATCTTGGAGGTGGCCCCTCAACTTAACATGGTCGAGCTTCGAAAATGCGGAGGAGACACTTTGGAATTTCACAAGTTCTATAAGAATCTATCTGTTGGGCTGAAAGACATCATTTGGAAAGCAGAACCTATTGATGAAGAATTGAATGATACACATACAGGTACAGGTACAGAAAAAGGTGCCAGTAGTAGTTCCAAATAA 1440 0.4403 MTSRSSGSGSGSGGGGGGSGSRSNGMRVGKYEMGRTLGEGNFAKVKFARNVETGENVAIKILDKEKVLKHKMISQIKREISTMKLVRHPNIIRLHEVMASKTKIYIVLELVTGGELFDKIASQGRMKEDEARKYFQQLICAVDYCHSRGVCHRDLKPENLLLGADGGLKVSDFGLSALPQQVREDGLLHTTCGTPNYVAPEVIKNKGYDGAKADIWSCGVILFVLMAGYLPFEDNNLMNLYKKIFNAQYECPPWFSSSAKKLIKKILDPNPATRMTIPELIENEWFKKGYKPPRFEQEDVSLDDIDAIFSEATDSHNLVVERREEEPVAPVTMNAFELISTSQGLNLRNLFQKQMGLVKRETRFTSKCSANEIISKIEEAAVPLGFDVKKNNTKLKLQGEKSGRKGHLAVSTEILEVAPQLNMVELRKCGGDTLEFHKFYKNLSVGLKDIIWKAEPIDEELNDTHTGTGTEKGASSSSK 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211478g00016 479 Pfam NAF domain 330 390 IPR004041 GO:0007165
Stsc211478g00016 479 ProSiteProfiles NAF domain profile. 328 352 IPR018451 GO:0007165
Stsc211478g00016 479 SMART serkin_6 31 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211478g00016 479 Gene3D Kinase associated domain 1, KA1 328 453 - -
Stsc211478g00016 479 SUPERFAMILY Protein kinase-like (PK-like) 28 313 IPR011009 -
Stsc211478g00016 479 ProSiteProfiles Protein kinase domain profile. 31 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211478g00016 479 FunFam Non-specific serine/threonine protein kinase 22 110 - -
Stsc211478g00016 479 MobiDBLite consensus disorder prediction 460 479 - -
Stsc211478g00016 479 ProSitePatterns Serine/Threonine protein kinases active-site signature. 150 162 IPR008271 GO:0004672|GO:0006468
Stsc211478g00016 479 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 27 438 - -
Stsc211478g00016 479 CDD STKc_SnRK3 30 285 - -
Stsc211478g00016 479 CDD CIPK_C 334 449 - -
Stsc211478g00016 479 MobiDBLite consensus disorder prediction 1 19 - -
Stsc211478g00016 479 Pfam Protein kinase domain 31 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211478g00016 479 ProSitePatterns Protein kinases ATP-binding region signature. 37 60 IPR017441 GO:0005524
Stsc211478g00016 479 Gene3D Transferase(Phosphotransferase) domain 1 111 293 - -
Stsc211478g00016 479 MobiDBLite consensus disorder prediction 1 27 - -
Stsc211478g00016 479 FunFam Non-specific serine/threonine protein kinase 327 453 - -
Stsc211478g00016 479 Gene3D Phosphorylase Kinase; domain 1 20 110 - -
Stsc211478g00016 479 FunFam Non-specific serine/threonine protein kinase 24 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211478g00016 Stsc-Chr211478 100498 105030 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211478g00016 19 460 CBL-interacting serine-threonine protein kinases AT1G01140 67.991 0.0 650
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Stsc211478g00016 Pkinase 3.8e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211478g00016 - - ahf:112734784 857.44