Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211478g00015 ATGCGAGACCCTTTAGACCTTACTCTCTTCCAACAACTTCCCCTCCATTCCCTCCCTTCCCTCCACCCTAAGTTGAAATCATCACTAGAAAACATGGGGATTTCCAACCTGTTTCCGGTGCAAGTTGCGGTCTGGCAAGAAACCGTTGGGCCCGGGAAATTCCACCGAGACCTTTGTGTTAACTCCCCCACCGGAAGTGGCAAGACCTTGGCCTATGCACTCCCCATCATACAGTTGCTCTCCACACGCGCCGTCACGTGCCTACGCGCATTGGTCGTTGTCCCTACACGTGACCTCGCCTTCCAGGTCAAGCGTGTCTTCGATGCCATTGCCTCGCCTCTCGGCCTGCGTGTCGGACTCGTTGCTGGTCAGTCTTCAATTGTGGAGGAGATTTCGGAGCTGGTGTACGCGCCGGAATGCGAGTTAGGAATTTCTTATGATCCGGAAGAGGTTTCGTTTCGTGTTTGGAGGCAGTTGAGAAGTAAGGGGGATATATTGGTGGCAACCCCTGGAAAATTGATGGATCATATCAATACCACCAAAGGCTTCACCCTTGAGCACCTTCAATATCTTGTGCTTGATGAAACGGATCGGCTACTCTGTGAGGCCTACCAGTCATGGCTACCTGCTGTGCTTGAATTAGCGCAGTCAAATGATGATAACAGTTTTGAACCAAGTGATTCGTTTTTACCTAATTTTATAGTGCGTTAA 711 0.5035 MRDPLDLTLFQQLPLHSLPSLHPKLKSSLENMGISNLFPVQVAVWQETVGPGKFHRDLCVNSPTGSGKTLAYALPIIQLLSTRAVTCLRALVVVPTRDLAFQVKRVFDAIASPLGLRVGLVAGQSSIVEEISELVYAPECELGISYDPEEVSFRVWRQLRSKGDILVATPGKLMDHINTTKGFTLEHLQYLVLDETDRLLCEAYQSWLPAVLELAQSNDDNSFEPSDSFLPNFIVR 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211478g00015 236 SMART ultradead3 33 236 IPR014001 -
Stsc211478g00015 236 Pfam DEAD/DEAH box helicase 39 215 IPR011545 GO:0003676|GO:0005524
Stsc211478g00015 236 Gene3D - 3 229 IPR027417 -
Stsc211478g00015 236 PANTHER RNA HELICASE 21 213 - -
Stsc211478g00015 236 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 49 236 IPR014001 -
Stsc211478g00015 236 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 214 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211478g00015 Stsc-Chr211478 96803 98213 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211478g00015 43 214 Eukaryotic Initiation Factors Gene Family AT3G13920 24.419 4.40e-12 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211478g00015 K14807 - tcc:18596452 302.753