Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211478g00008 ATGGAGGAGGAGGATGAGATCCAACCACAGCCGTGTAAGTTCCCAAGGCTCGCTAATGGCAGGACCGACCCCACCACCAACAACGCCAAGATAGCACCTTCTTCCAGAGATGACAACAGCAGCAGGCTCCATGGATGGCACCATTCCTCCAGGATCATCAGGGTTTCTAGAGCTTCTGGCGGCAAGGATCGCCACAGCAAGGTCATGACCTCTAAGGGCCTTCGAGACAGAAGGGTGAGGCTCTCCGTCACCACCGCCATTCAGTTTTACGACCTTCAAGACCGATTGGGCTATGACCAGCCAAGCAAGGCCGTCGAGTGGCTCATCAAGTCTGCTCAAGACGCCATTGCCGAGCTTCCTTCCTTGAACAACGCCTTCCCCGATACCCCCAAGCAACTCAGCCCCGATGCAGCCCACATAGACATAGAGCAGCAGCAGAAGCAGAACCAGAATCAGAACCTGTCACTGTCGAAATCGGCTTGCAGCAGCACTTCAGAGACGAGCAAGGGGTCTGGGTTGTCTCTGTCTCGAACCGATATCCGAGTGAAAGCCAGGGAGAGGGCAAGAGAGAGAGCGGCCAAGGAGAAGAAGAAAGACAACTGCACCAACAGCAATAACAATAGCGTTGTTCATGAACATCAGAACATAAACCCAGTTTCTCCTTCCTTTACTGAGCTACTCACAGGTGGGATAACAAGTGCGGTTCCAACAACAACTAATAGTCCTACTTCTGATGAGCCTGCTACTCTCTTCCACAAAGCAGCTGCTGCAAGGCAACAACACCACCACCAGCAATGGGCTTCACCACCCATGGATTACTTCTCCCAGGTTCTCGTTGGCCCGTCTTCATCTTCAAGAACACACCAACACCAACATCAACAGCAGATCCAACTGGGACATCATACCCTAGCCGAAGCCATATCCTTCAACAACAACAATGAGCATCACAACCACCACTTGCAACAGCAACAGCAACAGCAGCACTACTCCTTCATACCGGATCAGTTCATGCCAGCTCACTCTCATAATCATCATCAAAGTGGTGGCGACAATAATGATTACAACCTCAACTTCACGATATCTCCGGCTTCTTCAGTATCTGCAACATCTGCTTCAGCCTCTGGGCTTGCTGCTTACAACAACAATAGGGGGACCCTTCAGTCCAATTCTCCGTCCCATTTCTTGCCTCACCTCCAGAGGTTCTCGCTCCCTATGGACGGATCCACTGTTCCTTTCTTCATTGGAGCTGCTCCGCCGCCTCCCATCGACAACCACCATCATCAGTTCTCATCACCTGCATTTGATGGCCGCTTGCACCTCTACTACGCCGATGGAACCCGCCACGCCGACCACAAGGGCAAATCCTCCAAGAACTGA 1377 0.5207 MEEEDEIQPQPCKFPRLANGRTDPTTNNAKIAPSSRDDNSSRLHGWHHSSRIIRVSRASGGKDRHSKVMTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLIKSAQDAIAELPSLNNAFPDTPKQLSPDAAHIDIEQQQKQNQNQNLSLSKSACSSTSETSKGSGLSLSRTDIRVKARERARERAAKEKKKDNCTNSNNNSVVHEHQNINPVSPSFTELLTGGITSAVPTTTNSPTSDEPATLFHKAAAARQQHHHQQWASPPMDYFSQVLVGPSSSSRTHQHQHQQQIQLGHHTLAEAISFNNNNEHHNHHLQQQQQQQHYSFIPDQFMPAHSHNHHQSGGDNNDYNLNFTISPASSVSATSASASGLAAYNNNRGTLQSNSPSHFLPHLQRFSLPMDGSTVPFFIGAAPPPPIDNHHHQFSSPAFDGRLHLYYADGTRHADHKGKSSKN 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211478g00008 458 ProSiteProfiles TCP domain profile. 61 119 IPR017887 -
Stsc211478g00008 458 MobiDBLite consensus disorder prediction 179 201 - -
Stsc211478g00008 458 Pfam TCP family transcription factor 60 198 IPR017887 -
Stsc211478g00008 458 MobiDBLite consensus disorder prediction 1 49 - -
Stsc211478g00008 458 ProSiteProfiles R domain profile. 178 196 IPR017888 -
Stsc211478g00008 458 MobiDBLite consensus disorder prediction 20 39 - -
Stsc211478g00008 458 MobiDBLite consensus disorder prediction 146 212 - -
Stsc211478g00008 458 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 27 364 IPR005333 GO:0003700
Stsc211478g00008 458 MobiDBLite consensus disorder prediction 146 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211478g00008 Stsc-Chr211478 35808 42447 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211478g00008 42 454 TCP Transcription Factor Family AT4G18390 44.522 3.49e-77 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Stsc211478g00008 TCP 3.8e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211478g00008 - - gmx:100806032 381.719