Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211478g00001 ATGAGGAGGAACTGCAACTTAGAACTACGGCTATTCCCTTCTCCCGCCTCCGATCACCGATCCATGATGCTGGAAGAAGAAGAAGAAGCGAGTGAGAGTAGGAGTAGCCCAATATTATTGCAAGAAGGAAACCGCACCCCGCTCACCATATTCTACGATGGCAAGATTTCGGTTTGCGACGTGACTCACTCTCAGGCGAGATCCATCTTAATGCTTGCAAGAAGAGAATTAGAAGAGAGAGTGAGGACACCAACATCAACTTCAACTGGCTCGTCTGACCCATGTTCACCAGCGTTACTTCAATCATCATCAACACAACAACATAATATCATGAATAATAATAATCTGCATAGCCCTGCTGGGACTAGTAGTAGTCTTTCCATGAAAAGATCCCTTCAGAGGTTTCTTCAAAAGAGAAAGAACCGCCTTCAAGAAACATCCCCCTACCATCACTAG 456 0.4518 MRRNCNLELRLFPSPASDHRSMMLEEEEEASESRSSPILLQEGNRTPLTIFYDGKISVCDVTHSQARSILMLARRELEERVRTPTSTSTGSSDPCSPALLQSSSTQQHNIMNNNNLHSPAGTSSSLSMKRSLQRFLQKRKNRLQETSPYHH 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211478g00001 151 MobiDBLite consensus disorder prediction 83 130 - -
Stsc211478g00001 151 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 31 149 IPR040390 -
Stsc211478g00001 151 ProSiteProfiles Tify domain profile. 41 75 IPR010399 -
Stsc211478g00001 151 Pfam tify domain 44 73 IPR010399 -
Stsc211478g00001 151 SMART tify_2 41 75 IPR010399 -
Stsc211478g00001 151 Pfam Jas motif 129 149 IPR018467 -
Stsc211478g00001 151 MobiDBLite consensus disorder prediction 78 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211478g00001 Stsc-Chr211478 5376 6188 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211478g00001 1 150 Tify Gene Family AT1G30135 42.581 7.49e-23 85.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Stsc211478g00001 tify 2.7e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211478g00001 - - gmx:100781356 137.117