Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211477g00040 ATGGGTGCCAACAACAACTTGCACCAAATACTTAGAAGCCTATGCTTCAATACTCATTGGAACTATGCCATCTTTTGGAAGCTCAAACATCGTGCTCGAATGATCTTGACATGGGAGGATGCTTACTATGACCCTCCTCATGATCATGACTGTTCAGAAAGTAAGCACTGCCGGACGTCCTTAGAACAGATTGATGGTGGGAAATTTTCACATGACCCTCTGGGGTTGGCCGTGGCAAAGATGTCATATCGTGTATATTTGAAAGGGGAAGGTATTGTTGGACAGTTTGATGACGGGTGGCAGTCTCAGTTTTCGGCTGGAATTAGAACCATTGTTGTTGTACCTGTAGTCCCACTTGGTGTTGTTCAGCTGGGCTCTCTAAATAAAGTTATTGAAGATATGGGGATAGTAACTCATATCAGAGAAATTTTCTTGTATAGTCAAGATTACATAATAGGCCACATTCGTAGTCAAATGCAAAATAGTTTGCAGAGTTCTTCATCACTGCATGTTGTGTCTTCAGATATTAGGCCTGCTTGCTTCCATGGTACAGAGAAAATCATGACAAGTGAAACATTGGATGTTTTATTGCCTATTAACAATTATTCACTTCATTCTGCTAAAGAGAAAATGGATACTAATTTGACCAAGCATGGGGGGTCTGAATTTTACAGTGATGAGAGTTCTGTTTTGCTTCAATCAATATCCAATATGAAGCATCAAGAATGTGGAGAGATGAGATCAATGAGGGGGAGGAAGTATGAAGGGGGTAGTAGTGGCTGCAAAGACATGAAGTTGGAATTAGATAAGAACACAAGGCCCATTTTACACAATACTGATAGATTCAATGATTCAATAACTGCATGGGAGAAAGTCACAATTGATTCTGCATCCTTCCCTTCAGATGCAAAACCTATGGATGTTATTAACTCTAGCCAATTGACATATGAGTGTCGTCCAGAGCATCTTTTGGAAGCAATGGTGGCTAACTTTTTGCATAGCAATAATGATGTTAACAGTAGTGGTGTATCATTCTGCACATCAATGAATCAGGATGCTTCTATTCACCAAGTGCGTGCTAATAATCCAAATGGCTGTTCAATAAGTGAGTCTTGTCTTATCAGAGAAGACAAAAATAATTGTTTCAGTTCATCATCTGTCGAACCGTCTGCTGAACCAGCTAAGAACAGTAAGAGGAGAGGTAGGGTAGGAGAGAGCTGTAGGCCTAGGCCAAGGGACAGGCAGCTTATCCAAGACTGTATTAAGGAGTTACGGGAGCTGGTGCCAAGTGGAGCAAAGTGCAGCATTGATTCACTACTGGAGCGCGCTATAAAGCACATGCTCTTTCTCCAGAGCATAACTAAGCATGCTGACAAGCTCATTATAATTGCTGACACAAAGACTATGTTAGAATCCTCTAGTTATGAGCAGGGTTCAAGTTGGGTAATGGAGGTCAGGGGCCATCTGAAAGTTCATTCCATATTGGTGGAGAATCTTAGCAAGAATGGACATCTGCTTGTTGAGATGTTGTGTGAAGACAGCAAAAGCCATTTTCTTGATATAGCAAAAGCCATTAGAAGCTTGGACCTAACAATGTTAAAGAGATCAACAAGAAGTCATGGTGAGAAGATTTGGATAAGCTTTGTTGTTGAGAGCCAACATAACAGAAATGTGCACATATTGGATATCTTGTGGCCGCTTGTTCAAATTCTGCAAGCCAAAGCATCTCAAAATAATGGGCGCATTGTTCAAAATTCTGTTGGTCGACACTTAGAGTTTCTAGAATGGGGTGGGGGGTAA 1800 0.4106 MGANNNLHQILRSLCFNTHWNYAIFWKLKHRARMILTWEDAYYDPPHDHDCSESKHCRTSLEQIDGGKFSHDPLGLAVAKMSYRVYLKGEGIVGQFDDGWQSQFSAGIRTIVVVPVVPLGVVQLGSLNKVIEDMGIVTHIREIFLYSQDYIIGHIRSQMQNSLQSSSSLHVVSSDIRPACFHGTEKIMTSETLDVLLPINNYSLHSAKEKMDTNLTKHGGSEFYSDESSVLLQSISNMKHQECGEMRSMRGRKYEGGSSGCKDMKLELDKNTRPILHNTDRFNDSITAWEKVTIDSASFPSDAKPMDVINSSQLTYECRPEHLLEAMVANFLHSNNDVNSSGVSFCTSMNQDASIHQVRANNPNGCSISESCLIREDKNNCFSSSSVEPSAEPAKNSKRRGRVGESCRPRPRDRQLIQDCIKELRELVPSGAKCSIDSLLERAIKHMLFLQSITKHADKLIIIADTKTMLESSSYEQGSSWVMEVRGHLKVHSILVENLSKNGHLLVEMLCEDSKSHFLDIAKAIRSLDLTMLKRSTRSHGEKIWISFVVESQHNRNVHILDILWPLVQILQAKASQNNGRIVQNSVGRHLEFLEWGGG 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211477g00040 599 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 401 450 IPR011598 GO:0046983
Stsc211477g00040 599 MobiDBLite consensus disorder prediction 382 410 - -
Stsc211477g00040 599 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 7 144 IPR025610 -
Stsc211477g00040 599 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 95 242 IPR043561 GO:0003700|GO:0006355
Stsc211477g00040 599 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 414 457 IPR036638 GO:0046983
Stsc211477g00040 599 MobiDBLite consensus disorder prediction 393 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211477g00040 Stsc-Chr211477 189920 193707 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211477g00040 301 577 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31280 43.925 4.12e-66 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211477g00040 - - mtr:25499239 598.971