Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211477g00038 ATGACTGGTTCAGGTTCACCCTGTGGAGCCTGCAAATTCTTGAGGAGAAAATGTGTCAGAGGCTGTGTTTTTGCACCTTACTTTTCCCATGAACAAGGTTCTACCCATTTTGCAGCCATTCATAAGGTCTTTGGAGCAAGCAATGTCTCAAAGCTCCTTGCTCATCTTCCCGTTGCCCATCGCTGCGAAGCCGCAGTCACCATCTCATACGAAGCTCAGGCAAGGCTTCAAGATCCAATCTATGGCTGTGTCTCACATATTTTTGCCCTACAACAACAGGTTGTGAATTTACAAGCACAGTTGGCTTATTTACGGGAACAAGCAACACAGAGTTGTAATCTAAATGCCTCTCTCATTGAAAACCCTAATAATAATGGGGATTACTTTGGAAACCCTAATAATTATTGGTTCCAGAGGGAAAATTTCACCATGGTTCCACAGTTTCTTTCTAATAATCCATCATCTAGTTATCACTCATCAGCAACACAACAATACCATGTGAAGACTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTAGTAGCAGTCTCATGCTGATGGACACAAACCCTATTGGGAACTATGAAAATTCAAGCAACATCTCCTTTAATTCTTGCAGCTTTGATGAGAGTTGTGACTCATCAGTGTTCTTTGACATGAAAAGACTGTGGGCCTTTCATGAAGTGGATGAACTTCAATAA 705 0.4298 MTGSGSPCGACKFLRRKCVRGCVFAPYFSHEQGSTHFAAIHKVFGASNVSKLLAHLPVAHRCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVVNLQAQLAYLREQATQSCNLNASLIENPNNNGDYFGNPNNYWFQRENFTMVPQFLSNNPSSSYHSSATQQYHVKTPPPPPPPPPPPPSSSLMLMDTNPIGNYENSSNISFNSCSFDESCDSSVFFDMKRLWAFHEVDELQ 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211477g00038 234 Coils Coil 87 107 - -
Stsc211477g00038 234 MobiDBLite consensus disorder prediction 153 191 - -
Stsc211477g00038 234 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
Stsc211477g00038 234 ProSiteProfiles LOB domain profile. 6 108 IPR004883 -
Stsc211477g00038 234 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 159 - -
Stsc211477g00038 234 MobiDBLite consensus disorder prediction 167 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211477g00038 Stsc-Chr211477 181126 182154 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211477g00038 1 123 AS2 family AT2G42440 76.613 2.01e-65 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Stsc211477g00038 LOB 3e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211477g00038 K13945 K13944 tcc:18613179 240.736