Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211477g00034 ATGGAATCCATAAGCAGCCACCAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAAACGGATCGAAGATGGTATGAGTGTGTGTTCTGCAAGAGAGGCTTCACAAGTGCACAAGCCTTGGGCGGACACATGAACATTCATAGAAAGGACAAGGACGCCGCCAATAATAAACCTCCTACTTTTGTTACTACTCCTTCTACTTCTTCTCTGAATTCTTCAACTAAACTTGAAGAAGATCATCATCATCATCATCTCACCGCCTTCTATTACTTCTCATCAATTCCAACACGCCTTGGAGGGAATAATAATAATCCCTATGAGCTTCATTATTCTGATTCATCTTCTTCTTTTTCCAATCACCAACACAACCCTCAAGGTTACTTTGCTCCACCCAAGGAGAGAAATTTGAGTTTTTATAATAATCATAATAATAATTCATCATCGTCATGTGTTGGTGAAGTTAAAGACAAGGTGCAAGTAGATAATAGTGATGAAGGTGGCAGCGGCGGTCTTGATTTAGAGCTCAGACTTGGTCATCATCATCATCCTTAA 552 0.3986 MESISSHQEEEEEEEEEEETDRRWYECVFCKRGFTSAQALGGHMNIHRKDKDAANNKPPTFVTTPSTSSLNSSTKLEEDHHHHHLTAFYYFSSIPTRLGGNNNNPYELHYSDSSSSFSNHQHNPQGYFAPPKERNLSFYNNHNNNSSSSCVGEVKDKVQVDNSDEGGSGGLDLELRLGHHHHP 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211477g00034 183 MobiDBLite consensus disorder prediction 1 21 - -
Stsc211477g00034 183 MobiDBLite consensus disorder prediction 109 125 - -
Stsc211477g00034 183 Gene3D Classic Zinc Finger 5 84 - -
Stsc211477g00034 183 ProSiteProfiles Zinc finger C2H2 type domain profile. 25 52 IPR013087 -
Stsc211477g00034 183 MobiDBLite consensus disorder prediction 57 73 - -
Stsc211477g00034 183 MobiDBLite consensus disorder prediction 50 74 - -
Stsc211477g00034 183 ProSitePatterns Zinc finger C2H2 type domain signature. 27 47 IPR013087 -
Stsc211477g00034 183 PANTHER OS07G0101800 PROTEIN 1 180 - -
Stsc211477g00034 183 SUPERFAMILY beta-beta-alpha zinc fingers 20 52 IPR036236 -
Stsc211477g00034 183 MobiDBLite consensus disorder prediction 109 132 - -
Stsc211477g00034 183 Pfam C2H2-type zinc finger 25 49 - -
Stsc211477g00034 183 MobiDBLite consensus disorder prediction 160 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211477g00034 Stsc-Chr211477 150729 151280 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211477g00034 24 51 C2H2 Transcription Factor Family AT5G43540 82.143 1.41e-12 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211477g00034 - - aip:107647878 160.614