Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211477g00025 ATGATCAAGGACGCGATTGTGACCTTGAAGGAGAAAAACGGGTCCAGTCAATACGCGATTCAGAAGTTCATCGAAGAGAAGCAGAAGCAGCTACCTTCCAACTTCAGGAAGCTCCTCTTGTATCATTTGAAGAAGCTCGTTGCTTCTGGAAAGCTCGTTAAGGTCAAAGGCTCTTTCAAGCTTCCTCCGCTCAGGTCTTCAGCTCCCAAACCCGCTGCTGCTGCTCCTCCCAAGAAGAAGTCTGCACCTGCTAAGCCTAAACCAAAGCCCAAGCCCAAAGCTAAGCCTAAGCCTAAGCCAGCCTCTAAACCCAAGGAGACCAGGACGACTAAGTCAGCAGTTGCCAAAGCACCTGCCAAGGCCAAGACCGCTACTAAGCCCAAACCCAAGCCTAAGCCTGCTGCTAAACCCAAGGCTGCTGCTGCTAAGCCCAAGGCAGCTCCGGCCAAGTCTAAGGCTAAGGCTAAGACGGCACCAGCTGCAAAGCCGAAGGCAGCTGCGAAGCCTAAAGCGGCTGCGAAGCCTAAGGCGAAGCCCAAGGAGAGGCCCGCCAAGGCTTCTAGAACGTCGACGAGAACTTCACCCGGAAAGAGAGCCCCTGCCGCTAAGGCAGTGGCGAAGAAGGCTGCTCCGGCGAAGAAAGCCCCTGCAAGGGGTGCAAAGGCGAAGGCCGTAAAATCTCCGGCGAAGAAGGCGACGACGGCGAGAAGGGGGAGAAAGTGA 723 0.5546 MIKDAIVTLKEKNGSSQYAIQKFIEEKQKQLPSNFRKLLLYHLKKLVASGKLVKVKGSFKLPPLRSSAPKPAAAAPPKKKSAPAKPKPKPKPKAKPKPKPASKPKETRTTKSAVAKAPAKAKTATKPKPKPKPAAKPKAAAAKPKAAPAKSKAKAKTAPAAKPKAAAKPKAAAKPKAKPKERPAKASRTSTRTSPGKRAPAAKAVAKKAAPAKKAPARGAKAKAVKSPAKKATTARRGRK 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211477g00025 240 Pfam linker histone H1 and H5 family 1 61 IPR005818 GO:0000786|GO:0003677|GO:0006334
Stsc211477g00025 240 MobiDBLite consensus disorder prediction 59 240 - -
Stsc211477g00025 240 PANTHER HISTONE H1 1 223 - -
Stsc211477g00025 240 CDD H15 1 63 IPR005818 GO:0000786|GO:0003677|GO:0006334
Stsc211477g00025 240 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 1 63 IPR005818 GO:0000786|GO:0003677|GO:0006334
Stsc211477g00025 240 Gene3D - 1 67 IPR036388 -
Stsc211477g00025 240 SMART h15plus2 1 58 IPR005818 GO:0000786|GO:0003677|GO:0006334
Stsc211477g00025 240 MobiDBLite consensus disorder prediction 82 98 - -
Stsc211477g00025 240 PRINTS Histone H5 signature 126 143 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Stsc211477g00025 240 PRINTS Histone H5 signature 8 25 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Stsc211477g00025 240 PRINTS Histone H5 signature 87 101 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Stsc211477g00025 240 SUPERFAMILY "Winged helix" DNA-binding domain 1 63 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211477g00025 Stsc-Chr211477 105715 110698 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211477g00025 1 89 Single Myb Histone (SMH) Gene Family AT1G49950 38.043 3.29e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211477g00025 K11275 - gmx:100795994 150.214