Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211477g00024 ATGTCGTCCGAAGACCCAACCGTTGCCGTAGAGCAACCTGCACCTGAACCCGAAGCAACCGCCGATCCACCCCCGGAGCCAGAGCCCGAGAACGAGAAGCCCGAAGCCGCCAAGAAGCCCGCCAAGGAGCCCAAGCCCAAAAAAGCCGCCGCTCCTAGATCCCGAAACCCTTCCTCCCACCCTCCCTACGAAGAGATGATCAAGGACGCGATTGTGACCTTGAAGGAGAAAAACGGGTCCAGTCAATACGCGATTCAGAAGTTCATCGAAGAGAAGCAGAAGCAGCTACCTTCCAACTTCAGGAAGCTCCTCTTGTATCATTTGAAGAAGCTCGTTGCTTCTGGAAAGCTCGTTAAGGTCAAAGGCTCTTTCAAGCTTCCTCCGCTCAGGTCTTCAGCTCCCAAACCCGCTGCTGCTGCTCCTCCCAAGAAGAAGTCTGCACCTGCTAAGCCTAAACCAAAGCCCAAGCCCAAAGCTAAGCCTAAGCCTAAGCCAGCCTCTAAACCCAAGGAGACCAGGACGACTAAGTCAGCAGTTGCCAAAGCACCTGCCAAGGCCAAGACCGCTACTAAGCCCAAACCCAAGCCTAAGCCTGCTGCTAAACCCAAGGCTGCTGCTGCTAAGCCCAAGGCAGCTCCGGCCAAGTCTAAGGCTAAGGCTAAGACGGCACCAGCTGCAAAGCCGAAGGCAGCTGCGAAGCCTAAAGCGGCTGCGAAGCCTAAGGCGAAGCCCAAGGAGAGGCCCGCCAAGGCTTCTAGAACGTCGACGAGAACTTCACCCGGAAAGAGAGCCCCTGCCGCTAAGGCAGTGGCGAAGAAGGCTGCTCCGGCGAAGAAAGCCCCTGCAAGGGGTGCAAAGGCGAAGGCCGTAAAATCTCCGGCGAAGAAGGCGACGACGGCGAGAAGGGGGAGAAAGTGA 918 0.5708 MSSEDPTVAVEQPAPEPEATADPPPEPEPENEKPEAAKKPAKEPKPKKAAAPRSRNPSSHPPYEEMIKDAIVTLKEKNGSSQYAIQKFIEEKQKQLPSNFRKLLLYHLKKLVASGKLVKVKGSFKLPPLRSSAPKPAAAAPPKKKSAPAKPKPKPKPKAKPKPKPASKPKETRTTKSAVAKAPAKAKTATKPKPKPKPAAKPKAAAAKPKAAPAKSKAKAKTAPAAKPKAAAKPKAAAKPKAKPKERPAKASRTSTRTSPGKRAPAAKAVAKKAAPAKKAPARGAKAKAVKSPAKKATTARRGRK 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211477g00024 305 MobiDBLite consensus disorder prediction 1 69 - -
Stsc211477g00024 305 FunFam Histone H1 54 139 - -
Stsc211477g00024 305 MobiDBLite consensus disorder prediction 26 50 - -
Stsc211477g00024 305 SMART h15plus2 57 123 IPR005818 GO:0000786|GO:0003677|GO:0006334
Stsc211477g00024 305 CDD H15 57 128 IPR005818 GO:0000786|GO:0003677|GO:0006334
Stsc211477g00024 305 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 59 128 IPR005818 GO:0000786|GO:0003677|GO:0006334
Stsc211477g00024 305 Gene3D - 55 132 IPR036388 -
Stsc211477g00024 305 PRINTS Histone H5 signature 73 90 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Stsc211477g00024 305 PRINTS Histone H5 signature 191 208 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Stsc211477g00024 305 PRINTS Histone H5 signature 152 166 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Stsc211477g00024 305 PRINTS Histone H5 signature 46 67 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Stsc211477g00024 305 PANTHER HISTONE H1 26 288 - -
Stsc211477g00024 305 Pfam linker histone H1 and H5 family 60 126 IPR005818 GO:0000786|GO:0003677|GO:0006334
Stsc211477g00024 305 MobiDBLite consensus disorder prediction 124 305 - -
Stsc211477g00024 305 SUPERFAMILY "Winged helix" DNA-binding domain 56 137 IPR036390 -
Stsc211477g00024 305 MobiDBLite consensus disorder prediction 147 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211477g00024 Stsc-Chr211477 105715 111069 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211477g00024 29 154 Single Myb Histone (SMH) Gene Family AT1G49950 31.618 9.69e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211477g00024 K11275 - twl:120007504 175.637