Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211477g00019 ATGGCGAATCGGGTGGTGAAGGTGAAGAGGGAGACGATTGCGGCATGCATGACTTGCCCACTATGCAACAACCTCTTCAAAGAAGCCACCACCATATCCGAATGCCTTCACACCTTTTGCAGGAAGTGCATTTATGATAAGATCACAGATGAGGAATTAGAGTGCTGTCCAATATGCAACATTGATTTGGGTTGTGTTCCACTCGAAAAACTAAGGCCAGACCACAGTTTGCAAGATGTAAGGGCCAAAGTTTTTCCCTTAAAGGGAAGAAAGGTGACAAAGACACCTGAACCTGCTGCCCCCTCAGTATCACTACCAGCAAGAAGAAAGGAGAGATCTCTTTCATCCTTGGTGGTCAGCACTCCAAGGGTATCTCAACAAGCAACCATGACAGGAAGAAGAACAAAACCTACAAGAAAGGCTAGTAGTCTGCGATCCTCTAGTTTTTCCATCGAAAAGCCCATTAAAAAAGAGGAAGAAATACTAGAAAATCATCCCGAGAGTTCAAGTTCACCCGACACTTCAAATAAGTTTGCTCAAAATACTGGACAGAGTTCATCCCCTCGTGAAGGCAGTCAATCCTTACCAAATAATGGAACAGTGAATGGTTCCGAATCATGGGATGCAAAATTGGATCTTTGGAAGCCCTTGAATTGTTTAGTAGAAGTTGCAAGTAGGAGCAAATCTTTCAAGTCTAATGGACAAGGGTCCGATGCTAAACCAGAAACCATTCAAGTAAATGAAACTAATTCTCAAGTTCTAAAAACCAAAAAAAAGGAAAATAAACGCAAGGGGAAAACTGAGGATGAAAAGACTAGCACTTGTCCTGTCTCTTCTGATACAGCAAAACCCAATAAATCGCGTAGAGTTCGCCGTAGAAAGGAACCTTCTTTTGGGGAATCAGGCATATTACCCCAAGCTGTGCTGGATTCTAACAGCAGTAAACACCTAAGGACTGGTCCAATTTGGTTCTCCTTAGTAGCTTCTGATAACCAGGAAGGAGACGCACCCTTGCCTCAAATTCCTTCAAGTTATGTGAGAATAAAGGATGGAAGCATACCTGTCTCATTTATCCAAAAATACCTAGTGAAGAAACTAGAGCTGACAAGTGAAGCAGAGGTTGAGATTAAATGTATGGGGCAACCAGTGCTCCCTACGCTGCGGCTACAAAACTTGGTCGAGTTGTGGCTGGATTCTGCGGCCACATCACAGCGAACTCCAGCAACCATTGGGTCATCAGCAAAGGATTTTGTGATGGTCCTGGCATATGCTCGGAAGGTCCCACAATCTTGA 1293 0.4385 MANRVVKVKRETIAACMTCPLCNNLFKEATTISECLHTFCRKCIYDKITDEELECCPICNIDLGCVPLEKLRPDHSLQDVRAKVFPLKGRKVTKTPEPAAPSVSLPARRKERSLSSLVVSTPRVSQQATMTGRRTKPTRKASSLRSSSFSIEKPIKKEEEILENHPESSSSPDTSNKFAQNTGQSSSPREGSQSLPNNGTVNGSESWDAKLDLWKPLNCLVEVASRSKSFKSNGQGSDAKPETIQVNETNSQVLKTKKKENKRKGKTEDEKTSTCPVSSDTAKPNKSRRVRRRKEPSFGESGILPQAVLDSNSSKHLRTGPIWFSLVASDNQEGDAPLPQIPSSYVRIKDGSIPVSFIQKYLVKKLELTSEAEVEIKCMGQPVLPTLRLQNLVELWLDSAATSQRTPATIGSSAKDFVMVLAYARKVPQS 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211477g00019 430 MobiDBLite consensus disorder prediction 114 150 - -
Stsc211477g00019 430 SMART ring_2 19 59 IPR001841 -
Stsc211477g00019 430 ProSitePatterns Zinc finger RING-type signature. 35 44 IPR017907 -
Stsc211477g00019 430 ProSiteProfiles Zinc finger RING-type profile. 19 60 IPR001841 -
Stsc211477g00019 430 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 105 IPR013083 -
Stsc211477g00019 430 MobiDBLite consensus disorder prediction 228 298 - -
Stsc211477g00019 430 MobiDBLite consensus disorder prediction 151 166 - -
Stsc211477g00019 430 MobiDBLite consensus disorder prediction 91 203 - -
Stsc211477g00019 430 Pfam Zinc finger, C3HC4 type (RING finger) 19 59 - -
Stsc211477g00019 430 SUPERFAMILY RING/U-box 14 83 - -
Stsc211477g00019 430 MobiDBLite consensus disorder prediction 167 203 - -
Stsc211477g00019 430 MobiDBLite consensus disorder prediction 228 252 - -
Stsc211477g00019 430 CDD RING-HC_PCGF 17 60 - -
Stsc211477g00019 430 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 1 426 IPR044807 GO:0004842
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211477g00019 Stsc-Chr211477 84910 89959 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211477g00019 2 349 C3H Transcription Factor Family AT2G30580 53.846 4.87e-111 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211477g00019 K16277 - gmx:100793731 668.307