Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211477g00007 ATGGAGAGCAGTGATGAGCTGAATCTGGAGGCCACGGAATTAAGGTTAGGTTTGCCTGGCCCTGCAAGAACCAATAACAAGAGATCTTCACCAGAAGCTGAGAGATCCACCACCAGCATGAGCAAAAGCAGCAGCGTCGATTCTAGTGGTCCTAGTAACGCTACTCATGATGACGATGAAGTTGATCACCATGAAAATTCGGTCCAGCCTCCTGCAAAGGTTCAAGTAGTAGGGTGGCCACCAGTTAGATCGTTTAGGAGGAACAGCATGCAGCAGCAACAAAAAGAGAAGAAGAAGAAGGATGAGGATGGATGCGGGATGTACGTGAAGGTGAGCATGGCGGGTGCACCTTACTTGAGGAAGATAGATCTCAAGCTTTACAATTCTTACTCGCAACTTCTCAACGCCCTCCAGAATCTCTTCAAATGCACTTTTGGCCAATTTTCAGAGAGACAAGGTTACAACGGATCTGAATTTGCTCCTACTTATGAAGATAAGGACGGTGATTGGATGCTCCTTGGAGACGTTCCATGGGACATGTTCACCACTTCCTGCAAGAGGCTTAAGATTGTGAAAGGATCAGAAGCACAGGGCTTGGCTTCTTTATAA 609 0.468 MESSDELNLEATELRLGLPGPARTNNKRSSPEAERSTTSMSKSSSVDSSGPSNATHDDDEVDHHENSVQPPAKVQVVGWPPVRSFRRNSMQQQQKEKKKKDEDGCGMYVKVSMAGAPYLRKIDLKLYNSYSQLLNALQNLFKCTFGQFSERQGYNGSEFAPTYEDKDGDWMLLGDVPWDMFTTSCKRLKIVKGSEAQGLASL 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211477g00007 202 Gene3D - 87 202 - -
Stsc211477g00007 202 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 6 197 IPR003311 GO:0005634|GO:0006355
Stsc211477g00007 202 FunFam Auxin-responsive protein 100 202 - -
Stsc211477g00007 202 Pfam AUX/IAA family 12 200 IPR033389 -
Stsc211477g00007 202 ProSiteProfiles PB1 domain profile. 106 198 IPR000270 GO:0005515
Stsc211477g00007 202 MobiDBLite consensus disorder prediction 53 67 - -
Stsc211477g00007 202 SUPERFAMILY CAD & PB1 domains 100 190 - -
Stsc211477g00007 202 MobiDBLite consensus disorder prediction 1 77 - -
Stsc211477g00007 202 MobiDBLite consensus disorder prediction 23 52 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211477g00007 Stsc-Chr211477 42376 43658 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211477g00007 97 201 B3 DNA Binding Superfamily AT2G46530 31.429 2.30e-10 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Stsc211477g00007 AUX_IAA 3.2e-59 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211477g00007 K14484 - gmx:100792134 247.669