Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211477g00006 ATGGCTAGCAACCCTTCCGACCCTCCCGCCGACGACTTCCTGGAACAAATACTTGGCCTTCCAACCTTCGCCGATGCCGGAGGGGCTTTCCACTCTCCCATGTACCACTTAGGTCTCAGCTTGGATCAAGGCAAAGGAGCAGATGCAGGACCACCAGGGTTCTTGAACCCACCGGCAGAGCCCTCAGGTAGCGCCAAGCGGTTTCGCGACGACGTCCTTGATGCCAGACCTAAGAACGTATTTCATGGCCAACCAATGCCTACTACTATTCCGGCAGCTCCACATCCTCCAACAATGCGTCCTAGGGTGCGGGCCAGAAGAGGACAGGCTACAGACCCACACAGCATAGCTGAACGGTTGCGCAGAGAAAGAATAGCAGAAAGAATCAGGGCTTTGCAAGAGCTGGTTCCAAGTGTAAACAAGACAGATAGAGCTGCAATGTTAGATGAAATTGTGGATTATGTCAAGTTCTTAAGACTTCAAGTGAAGGTTTTGAGCATGAGTAGATTGGGTGGAGCTGGTGCAGTGGCACCACTGGTGACTGACATCCCATTATCATCAGTTGAGGAGGAAGGCGGTGAAGGTGGAAGAAACCGGCCGGCTTGGGACAAGTGGTCAAATGATGGCACAGAAAGACAAGTGGCTAAGCTTATGGAAGAAAACGTTGGAGCAGCCATGCAGTTTCTTCAATCCAAGGCACTCTGCATCATGCCAATCTCACTTGCATCGGCGATATACCAGTCACAACCCCCGGACACCTCTAGTATAGTGAAGCCAGAAGCTAACCCTCCTCCATAG 798 0.5175 MASNPSDPPADDFLEQILGLPTFADAGGAFHSPMYHLGLSLDQGKGADAGPPGFLNPPAEPSGSAKRFRDDVLDARPKNVFHGQPMPTTIPAAPHPPTMRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLSSVEEEGGEGGRNRPAWDKWSNDGTERQVAKLMEENVGAAMQFLQSKALCIMPISLASAIYQSQPPDTSSIVKPEANPPP 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211477g00006 265 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 109 158 IPR011598 GO:0046983
Stsc211477g00006 265 MobiDBLite consensus disorder prediction 42 66 - -
Stsc211477g00006 265 FunFam Basic helix-loop-helix transcription factor 104 166 - -
Stsc211477g00006 265 Gene3D - 104 166 IPR036638 GO:0046983
Stsc211477g00006 265 SMART finulus 115 164 IPR011598 GO:0046983
Stsc211477g00006 265 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 107 168 IPR036638 GO:0046983
Stsc211477g00006 265 MobiDBLite consensus disorder prediction 78 113 - -
Stsc211477g00006 265 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 89 244 - -
Stsc211477g00006 265 Pfam Helix-loop-helix DNA-binding domain 114 158 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211477g00006 Stsc-Chr211477 36516 40123 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211477g00006 30 264 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 80.083 3.41e-118 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc211477g00006 HLH 9.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211477g00006 - - ccaj:109808880 415.231