Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211477g00003 ATGGACACCCACTCCTCTCACGGCGCGGGGCCCCTCCGTTCCCGGAGCTCGCAGTCCCCTTCTCCCTCTCACTCCGCCTCAGCCTCCGCCACCTCTTCCATCCACAAGCGCAAGCTCGCCTCTGAAGACCACGCGCCACCCTTTCCCCCTTCTTCCTTTTCCGCCGACACCCGCGACGGCGCTCTCACCTCCAACGACGATCTCGAGAGCATCTCCGCCCGTGGCGCAGACTCAGATTCCGACGCCGACGACTCCGAGGATGCAGTCGTGGACGACGACGAGGACGACTACGACAATGACTCCTCCATGCGCAACTTCACCGCCGCTAGGCTCGACGGAAGCGCTGGCGCCGGTGGCGCCTCCGCCCCACGCAACACCAAGCTCAAGACCGAAAACTCAGTCACCGTGAAGATCGAGAGCTCCGACGGCGTCAACAAGGACGCTGGTGTAGCTGGAAATTCCGCCGCCGTTGGCACCGTTGCCACTGCCGGATCCGTCCCCGGTATAGTGGTGAAGGAAGACGCTAGCAAGATATTTACGGATAATTTGCAGACGAGTGGAGCTTACAGTGCGAGAGAAGAGAGTCTGAAGAAAGAGGAGGAAGCGGGAAGGCTCAAATTTGTGTGCTATTCAAATGATGGTGTTGACGAGCATATGGTTTGGTTAATAGGATTGAAGAATATATTTGCTAGGCAACTTCCCAATATGCCAAAGGAGAGCCATAAGTCTGTAATGGTTATAAGGCGGAATCATGTTGTTGGAGGCATTACATATCGGCCATATGTAAGCCAGAAGTTTGGCGAGATAGCCTTCTGCGCAATTACTGCTGATGAGCAAGTAAAAGGTTATGGTACCAGATTAATGAATCACTTAAAACAGCATGCACGTGATGTAGATGGGCTCACACATTTTTTAACTTATGCTGACAATAATGCTGTTGGATATTTTATCAAACAGGGATTCACAAAGGAGATTCACTTGGAGAAAGATCGATGGCAAGGCTATATAAAAGACTATGATGGAGGAATTCTCATGGAATGCAAGATTGATCCGAAGCTCCCATATATTGATTTGTCAACAATGATTCGTCGTCAACGGCAGGCTATTGATGAAAAGATCAGAGAGTTGTCAAATTGTCACATTGTCTATGCTGGCATTGATTTTCAGAAGAAAGAAGCTGGAATCCCTAAAAAAATTGTCAAAGTTGAGGACATCCCTGGATTGAGAGAGGCTGGTTGGACCCCTGATCAGTGGGGTCATTCACGATTCAGACTAAGCAACGCTACAGACGGTGCTGCAAATCTGAAGCATTTGACAGCGTATATGCGATCCCTTCTGAAGTCAATGCACGATCATACTGATGCTTGGCCATTCAAGGAACCGGTTGATGCACGAGATGTTCCTGATTATTATGACATAATTAAAGATCCAATGGATCTGAAGACAATGACTAAGAGGGTGGAATCAGAGCAATATTATGTGACATTTGAGATGTTTGTTGCGGATGTGAAAAGAATGTTCGCAAATGCACGCACATATAACTCTCCTGAAACCATATATTACAAATGTGCTACAAGGTTAGAAGCACATTTTCAGAGTAAAGTGACATCAGGTGTCCAATCTGGTACCAAAATGCAGTAG 1641 0.4826 MDTHSSHGAGPLRSRSSQSPSPSHSASASATSSIHKRKLASEDHAPPFPPSSFSADTRDGALTSNDDLESISARGADSDSDADDSEDAVVDDDEDDYDNDSSMRNFTAARLDGSAGAGGASAPRNTKLKTENSVTVKIESSDGVNKDAGVAGNSAAVGTVATAGSVPGIVVKEDASKIFTDNLQTSGAYSAREESLKKEEEAGRLKFVCYSNDGVDEHMVWLIGLKNIFARQLPNMPKESHKSVMVIRRNHVVGGITYRPYVSQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLTYADNNAVGYFIKQGFTKEIHLEKDRWQGYIKDYDGGILMECKIDPKLPYIDLSTMIRRQRQAIDEKIRELSNCHIVYAGIDFQKKEAGIPKKIVKVEDIPGLREAGWTPDQWGHSRFRLSNATDGAANLKHLTAYMRSLLKSMHDHTDAWPFKEPVDARDVPDYYDIIKDPMDLKTMTKRVESEQYYVTFEMFVADVKRMFANARTYNSPETIYYKCATRLEAHFQSKVTSGVQSGTKMQ 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211477g00003 546 PRINTS Bromodomain signature 502 521 IPR001487 GO:0005515
Stsc211477g00003 546 PRINTS Bromodomain signature 467 483 IPR001487 GO:0005515
Stsc211477g00003 546 PRINTS Bromodomain signature 453 466 IPR001487 GO:0005515
Stsc211477g00003 546 SMART bromo_6 431 540 IPR001487 GO:0005515
Stsc211477g00003 546 ProSitePatterns Bromodomain signature. 455 513 IPR018359 -
Stsc211477g00003 546 Gene3D - 429 545 IPR036427 GO:0005515
Stsc211477g00003 546 PANTHER GH11602P 23 542 IPR037800 GO:0004402
Stsc211477g00003 546 MobiDBLite consensus disorder prediction 56 71 - -
Stsc211477g00003 546 Pfam Acetyltransferase (GNAT) family 244 321 IPR000182 GO:0016747
Stsc211477g00003 546 SUPERFAMILY Bromodomain 428 535 IPR036427 GO:0005515
Stsc211477g00003 546 CDD NAT_SF 243 297 - -
Stsc211477g00003 546 MobiDBLite consensus disorder prediction 1 134 - -
Stsc211477g00003 546 ProSiteProfiles Bromodomain profile. 450 521 IPR001487 GO:0005515
Stsc211477g00003 546 CDD Bromo_gcn5_like 438 535 - -
Stsc211477g00003 546 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 205 350 IPR000182 GO:0016747
Stsc211477g00003 546 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 241 355 IPR016181 -
Stsc211477g00003 546 Gene3D - 201 356 - -
Stsc211477g00003 546 Pfam Bromodomain 443 525 IPR001487 GO:0005515
Stsc211477g00003 546 MobiDBLite consensus disorder prediction 80 99 - -
Stsc211477g00003 546 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211477g00003 Stsc-Chr211477 21844 27114 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Stsc211477g00003 Bromodomain 1.7e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211477g00003 K06062 - gmx:100791610 840.491