Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211476g00005 ATGGCGAATCGCTGGTGGACTGGGAATGTGGCTATGAGGCCAACCGACTCAATCACACCCTCCCCAGCACTTCACCTCAGAAGAGAACAAGAGTTCTTGGACACTCCCAACAACAACAACATCAATACTCCAACAAACAGCAGCAACAGCAACACCAACCCCAACACCGAAGAAGACGACAGCAGAGACACCGGTGCTGCAGGAGACGATAACAACCCACCAAGCGCCGGGGGACCTGGAAGAAGGCCACGTGGCAGGCCTCCCGGATCCAAGAACAAGCCCAAACCCCCAATCGTCATCACCAAAGACACTCCCAACGCACTCCGCAGCCATGTTCTTGAGATCAGCAGCGGCAGCGACGTCGCAGAAAGCATCGCCACCTTCGCCAACCGCCGCCACCGCGGTGTCTCGGTTCTCAGTGGAAGCGGCATTGTTGCAAACGTCACGCTCCGCCAACCGGCTGCTCCCGGTGGCGTCATCACTCTCCATGGAAGGTTCGAGATACTCTCACTCAACGGTGCCTTCCTGCCCGCTCCTTCTCCTCCCGGCGCCACGGGACTCACCGTTTACCTGTCCGGCGGTCAGGGGCAGGTGGTTGGCGGAACTGTTGTGGGGTCCTTGGTGGCTTCGGGTCCTGTAATGGTGATTGCCGCAACCTTTGCCAATGCTACTTATGAGCGCTTACCACTTGCGGAAGATGAACAAGGTGAAGAAGAAATGCAAGTGCAGCAGGAGCAGCAGCAGCAACATTCAGGAGGATTGAGTGGCGGTGGTGCTGGTGCTGGTGGTGGAACTCCTCAGGGTGGTGGTGGTGGTGGTGGTGGTAGTGGAGGTTCTTCTTCTCAAGGTGGTGGGTTGGGTGAGGGTGGTGGTTCCGTGGGAATATACAATTTAGCACCGAATTTGATGCACAACGGTCAATTGGCGGCACATGATGTTTTCTGGGGGCCTCCACCGCCTCGTCCTCCGCAGCCTCCTTCTTTCTAA 987 0.5724 MANRWWTGNVAMRPTDSITPSPALHLRREQEFLDTPNNNNINTPTNSSNSNTNPNTEEDDSRDTGAAGDDNNPPSAGGPGRRPRGRPPGSKNKPKPPIVITKDTPNALRSHVLEISSGSDVAESIATFANRRHRGVSVLSGSGIVANVTLRQPAAPGGVITLHGRFEILSLNGAFLPAPSPPGATGLTVYLSGGQGQVVGGTVVGSLVASGPVMVIAATFANATYERLPLAEDEQGEEEMQVQQEQQQQHSGGLSGGGAGAGGGTPQGGGGGGGGSGGSSSQGGGLGEGGGSVGIYNLAPNLMHNGQLAAHDVFWGPPPPRPPQPPSF 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211476g00005 328 CDD DUF296 109 192 IPR005175 -
Stsc211476g00005 328 Pfam Plants and Prokaryotes Conserved (PCC) domain 109 221 IPR005175 -
Stsc211476g00005 328 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 43 316 IPR014476 GO:0003680
Stsc211476g00005 328 SUPERFAMILY AF0104/ALDC/Ptd012-like 106 233 - -
Stsc211476g00005 328 MobiDBLite consensus disorder prediction 233 298 - -
Stsc211476g00005 328 FunFam AT-hook motif nuclear-localized protein 108 235 - -
Stsc211476g00005 328 Gene3D - 108 251 - -
Stsc211476g00005 328 MobiDBLite consensus disorder prediction 1 103 - -
Stsc211476g00005 328 MobiDBLite consensus disorder prediction 33 55 - -
Stsc211476g00005 328 ProSiteProfiles PPC domain profile profile. 105 243 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211476g00005 Stsc-Chr211476 37563 38549 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211476g00005 1 328 AT-hook Motif Nuclear Localized (AHL) Family AT3G55560 49.713 1.39e-71 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211476g00005 - - qsa:O6P43_020634 303.523