Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211475g00019 ATGGCCTTTCTTGGCGATCCAAGAAGTTGGATTTCATATATGAACAGCAAAGATTGTTCATCATCAGAGTGGTGTGACATACATAAACTGTATCCTCCTCCATCAACACCACCTCCTCATTCAAGCCCAAAATTTTCCCCTCTCATAATTGCCATGGCTGGGATCTTGGCATCAGCTTTTATTCTTGCAAGTTATTACTATAACTGCCGCAGAGTTAACAGCAATGATGATGACAACGACGAGTCAATCCATGAGACCGCAACCGACATTGGCAGCAACTTATTAGAGGAGAATAATGCGTTGGAGTGGATGGCAGTGTGGAAGTACAAGAGAGGCAATGACAGATCCGATAGCTGTTGTGTTTGTCTGAGTGAATTTGAGGAGGGAGAGAGTGTTAGGGTGTTACCCAACTGCACCCATGCTTTTCATCCTCCTTGCATTGAGACATGGCTCAAGTCTCAATCCACCTGCCCTCTTTGTCGTCGTGCCAGTGTTCCTGTAGTTCCAGCATACACGGTGGTCATTGACCTCCCGCTCCATGCTGGAACTACGAGTGACACTGAAACTACTAACGAAGAGGAGGCGGCGGAAGAAACCATACACAATAATGGTGATGTTCAAGCTCCTCCTCCTCTTCCTGCATTAATGTGGCATTCTCTTAGTGATTTGGGTAGACATAATAATAACAACAGCCTCCACAGAATAATTGATATAATTGATGATCAGTCCATTAATAAAATTATTGGGAAGTCAGTTTCTATGGACCACCACCCTTTGTCGTCACCGTTGTCGTCGTCAAAATACAGAGCTCGTGGAGATCAAAGTAGCAATAAGTATGGCAGCTATAAGAGAAAACAACTCTTGCATTCTGTATTCAGGGGCCCAATCTCTATGAAAAGGTCATTTTCCAGTCGTGCAAGATTCTCACTTACCACAACTACTCACACACCAAGGCACCCAGTTATCATCATACCTCCTTTGTAA 984 0.4411 MAFLGDPRSWISYMNSKDCSSSEWCDIHKLYPPPSTPPPHSSPKFSPLIIAMAGILASAFILASYYYNCRRVNSNDDDNDESIHETATDIGSNLLEENNALEWMAVWKYKRGNDRSDSCCVCLSEFEEGESVRVLPNCTHAFHPPCIETWLKSQSTCPLCRRASVPVVPAYTVVIDLPLHAGTTSDTETTNEEEAAEETIHNNGDVQAPPPLPALMWHSLSDLGRHNNNNSLHRIIDIIDDQSINKIIGKSVSMDHHPLSSPLSSSKYRARGDQSSNKYGSYKRKQLLHSVFRGPISMKRSFSSRARFSLTTTTHTPRHPVIIIPPL 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211475g00019 327 CDD RING-H2_EL5-like 118 161 - -
Stsc211475g00019 327 MobiDBLite consensus disorder prediction 257 280 - -
Stsc211475g00019 327 SUPERFAMILY RING/U-box 99 167 - -
Stsc211475g00019 327 ProSiteProfiles Zinc finger RING-type profile. 119 161 IPR001841 -
Stsc211475g00019 327 Pfam Ring finger domain 117 161 IPR001841 -
Stsc211475g00019 327 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 166 IPR013083 -
Stsc211475g00019 327 SMART ring_2 119 160 IPR001841 -
Stsc211475g00019 327 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 41 167 IPR044675 -
Stsc211475g00019 327 MobiDBLite consensus disorder prediction 255 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211475g00019 Stsc-Chr211475 130471 131454 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211475g00019 1 177 C3H Transcription Factor Family AT3G03550 36.818 1.09e-28 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211475g00019 - - aip:107616926 375.555