Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211475g00016 ATGAAAATGGCTGCTTTAGAATCAAGTTTGAGAGTGTTAGCAGCAGGAGCTCATCCTTGTTGCTTTCCCAACAACACAAAACCGCCCCAAACCATATCCATAACCTTCCTCCGCACACGTGTCTGCGCCTCTCTTGCTTCTTCCACTCCCACTGCCCCTTTCCATTTGCAAAATGAAGTTCCCCATCACACCACAAACACAAACCACACCAAGCTTTACGCCTCTAACTTGCCATGGTCCCTCTCCCCCGCAGATATCAACTCTCTCTTTTCTCAATGCGGAACTGTTACCGATGTCGAGATGATAAAGAAAAAAGAAGGTGGATTGACTGGCTTCGCCTTCATTACCATGTCTTCTCCCCAAGAGGCTCAGGCTGCTATTCATAAATTCCACTCTCTTCAAATATCGGGCCGGACAATTAAAGTAGAGCTTGCAAAGAGATTTAAGAAACCACGTCCTCTGGATCCTTCTGCCGGAGAGACACGCTATAAAATTTATGCATCCAATCTCGCTTGGAAAGTAAGATCCAGCCATCTCAGAGAATTCGTCATTGAGAATTTTAAAGAACCGGTTTCAGCCAGAGTTGTGTTTGACAGTACTTCTGGAAGATGTGCTGGGTATGGATTTGTTTCTTTTGTTTCAAAGGAGGAAGCAGAGGATGCCATTTCTGCTTTGGATGGGAAGGAATTAATGGGGCGAGCTGTTAACCTAAAATTTAGCCGAAAGACCATCGAAGAAGCTGATATTGATAATGACAAAGAAGAGCAGGGTTGTCATGAACAATTGGAAACACCATAA 798 0.4436 MKMAALESSLRVLAAGAHPCCFPNNTKPPQTISITFLRTRVCASLASSTPTAPFHLQNEVPHHTTNTNHTKLYASNLPWSLSPADINSLFSQCGTVTDVEMIKKKEGGLTGFAFITMSSPQEAQAAIHKFHSLQISGRTIKVELAKRFKKPRPLDPSAGETRYKIYASNLAWKVRSSHLREFVIENFKEPVSARVVFDSTSGRCAGYGFVSFVSKEEAEDAISALDGKELMGRAVNLKFSRKTIEEADIDNDKEEQGCHEQLETP 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211475g00016 265 SUPERFAMILY RNA-binding domain, RBD 52 154 IPR035979 GO:0003676
Stsc211475g00016 265 SUPERFAMILY RNA-binding domain, RBD 154 243 IPR035979 GO:0003676
Stsc211475g00016 265 SMART rrm1_1 71 143 IPR000504 GO:0003723
Stsc211475g00016 265 SMART rrm1_1 164 238 IPR000504 GO:0003723
Stsc211475g00016 265 Gene3D - 47 151 IPR012677 -
Stsc211475g00016 265 PANTHER OS02G0815200 PROTEIN 65 240 - -
Stsc211475g00016 265 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 72 141 IPR000504 GO:0003723
Stsc211475g00016 265 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 165 235 IPR000504 GO:0003723
Stsc211475g00016 265 CDD RRM_SF 72 143 - -
Stsc211475g00016 265 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 163 242 IPR000504 GO:0003723
Stsc211475g00016 265 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 70 147 IPR000504 GO:0003723
Stsc211475g00016 265 Gene3D - 152 248 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211475g00016 Stsc-Chr211475 124563 127071 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211475g00016 51 242 Eukaryotic Initiation Factors Gene Family AT3G16380 25.871 4.24e-15 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211475g00016 - - qsa:O6P43_025150 251.906