Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211475g00010 ATGGCCGTAGCTCCGGCGATAACCCGCCTCCGGCCAACTCTCCTCCTCTTCCTCTACTACGTACTCATCATCATCCCCGTCCAAGTCACATTTTCCATGTCAGAAGCTGAAGCTTTGCTTACCCTCAAGAACTCGTTCTCCAATTCCCAAGCCTTGGCTTCTTGGGTTTCTAACTCTCTTCCCTGCACTGAAAAAAATGAATGGGACGGTGTTATCTGCTTCAATGGCTTAGTCTCTGGGCTTCGTCTCGGAGGAATGGGGCTATTCGGTGAAATCGATGTTGATGCATTGCTCGAACTCAAGGCTCTCAGAACCATTAGCATTGTCAACAACTCTTTCTCAGGCTCAATCCCTCAGCTCAACAGAATTGGCTTCTTGAAAGCTATGTATTTGTCGGGAAACAAATTCTCTGGGGATATTCCTTCAGGTTACTTTCAGAGAATGAAGTCTCTCAAGAAATTGTGGCTTTCCAACAACGAATTCACAGGTCAGATCCCGCCGTCATTGGCTGATATCCCTCAGCTTGTTGAGTTGCATCTTGAGAATAACCAGTTTCGTGGCAACATCCCGAATTTGGAGAATCCCTTGTTGGTGGATCTTGATTTGTCGAATAACAAATTGGAAGGTGAAGTTCCAAAGGGTTTAATCAAGTTCAATGATAGTTCTTTCCAAGGAAATGCTGGAATTTGCGGCGACAAGATTGGGAAGCCATGTGATGATGATGATGGGAAGAAGGAAGAGAAAATAAGTGTGGTTGTGCAAAGCGACAGTAGGCATGGTGGTAGATGGAAGAACGACACAGTGCAGATTGCTGGCTTTGTGTTAACGAGCTTCTTGCTTGTCTCGCTCATTGCTTTCTTCATTGTCCGGTCGAAAAGGAAGGAGAGTGAGAATCTTGGTAGGCTTGGAAACGGCGGAGGTAGCGTTGCCGGAGAGTCTGTGCAGGTTCGTGTGAGTGAGCCGGTGAAAAGAGAAGGAGGAGGGGTGGCGGTGACGGTGAGAAAAGGATCAAGCAAAAGAAGGGGAGGGTCTTCTCATGGTGGCAGCAGCAGGGGCGGGATCGGGGAGCTTGTGGTTGTGAACGATGAGAAGGGGGTCTTCGGGTTGTCGGATTTGATGAAGGCGGCGGCGGAGGTGGTGGGGAATGGTGGGCTTGGGTCATCTTATAAGGCGGTGATGTCAAATGGGGTGGCGGTGGTGGTGAAGAGGACGAGGGAGATGAATGCGTTGGAGAAAGAAAGTTTTGAAGGGGAGATGTGGAAGCTTGGGAGGTTGAAACATTGGAATGTGTTGACTCCTTTGGCTTACCATTTCAGAAAGGATGAGAAACTAATTATGTCTGAGTATGTACCCGGGAGCAGTCTTTTGTTTTTGCTTCATGGTGACAGGGGACCATCTCACGCTCAATTGGATTGGCCAGCACGTTTCAAGATTGTCAAGGGAATCGCTCAAGGCATGTGTTATCTTCACACAGAGCTAGCTTCCTCTAATGTACCCCATGGCAATCTCAAGTCTAGTAACGTTCTCTTAGGACCAGATTACCAGCCACTTCTTGTAGATTATGGATTCAGCCAAATGGTTAATCCTTCCAATGTATCACAATTTCTGTTTGCTTATAAGGCTCCTGAAGCCGCACGAGGCCAAGTTTGTCACAAAAGTGACGTGTATTGTCTCGGAGTTGTAATACTCGAGATTCTCACCGGAAAATTCCCTTCTCAGTATCTCAGCAACAATAAGGGCGGGACCGACGTGGTGGAATGGGTGACGTCGGCGATTTCGGAGGGGAGGGAAACAGAATTGCTTGATCCTCTGATTGCAATAAACAACAAGGTTTACACAGGTCAGATGGTTCTACTTCTCCATGTAGGTGCTGCTTGCACGGAAAGCAACCCGGAGAAACGGATCGACATGAAGGAAGCCATAAGAAGGATAGAAGATGTAGGAAAACAGAGTGGCTATGCAGAGTCTCAAGGTGAGCAATCTAGGAGGAGAGGTGGAACAGAAAGCATTGGAAGTGAGGAATATTTTGAATTTGGCTCCTTCTCCTCAACAACAGCACCACCCTAG 2067 0.4765 MAVAPAITRLRPTLLLFLYYVLIIIPVQVTFSMSEAEALLTLKNSFSNSQALASWVSNSLPCTEKNEWDGVICFNGLVSGLRLGGMGLFGEIDVDALLELKALRTISIVNNSFSGSIPQLNRIGFLKAMYLSGNKFSGDIPSGYFQRMKSLKKLWLSNNEFTGQIPPSLADIPQLVELHLENNQFRGNIPNLENPLLVDLDLSNNKLEGEVPKGLIKFNDSSFQGNAGICGDKIGKPCDDDDGKKEEKISVVVQSDSRHGGRWKNDTVQIAGFVLTSFLLVSLIAFFIVRSKRKESENLGRLGNGGGSVAGESVQVRVSEPVKREGGGVAVTVRKGSSKRRGGSSHGGSSRGGIGELVVVNDEKGVFGLSDLMKAAAEVVGNGGLGSSYKAVMSNGVAVVVKRTREMNALEKESFEGEMWKLGRLKHWNVLTPLAYHFRKDEKLIMSEYVPGSSLLFLLHGDRGPSHAQLDWPARFKIVKGIAQGMCYLHTELASSNVPHGNLKSSNVLLGPDYQPLLVDYGFSQMVNPSNVSQFLFAYKAPEAARGQVCHKSDVYCLGVVILEILTGKFPSQYLSNNKGGTDVVEWVTSAISEGRETELLDPLIAINNKVYTGQMVLLLHVGAACTESNPEKRIDMKEAIRRIEDVGKQSGYAESQGEQSRRRGGTESIGSEEYFEFGSFSSTTAPP 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211475g00010 688 Gene3D Phosphorylase Kinase; domain 1 355 449 - -
Stsc211475g00010 688 Pfam Leucine rich repeat N-terminal domain 34 73 IPR013210 -
Stsc211475g00010 688 Gene3D Transferase(Phosphotransferase) domain 1 451 668 - -
Stsc211475g00010 688 Pfam Protein kinase domain 378 641 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211475g00010 688 ProSiteProfiles Protein kinase domain profile. 374 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211475g00010 688 Pfam Leucine rich repeat 126 185 IPR001611 GO:0005515
Stsc211475g00010 688 Gene3D Ribonuclease Inhibitor 33 193 IPR032675 -
Stsc211475g00010 688 SUPERFAMILY L domain-like 33 217 - -
Stsc211475g00010 688 SUPERFAMILY Protein kinase-like (PK-like) 378 643 IPR011009 -
Stsc211475g00010 688 MobiDBLite consensus disorder prediction 333 354 - -
Stsc211475g00010 688 MobiDBLite consensus disorder prediction 648 688 - -
Stsc211475g00010 688 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 22 651 IPR046959 -
Stsc211475g00010 688 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 94 189 - -
Stsc211475g00010 688 Gene3D Ribonuclease Inhibitor 194 241 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211475g00010 Stsc-Chr211475 75638 78525 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211475g00010 13 647 Receptor kinase-like Gene Family AT3G42880 46.923 0.0 540
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Stsc211475g00010 Pkinase 1.8e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211475g00010 - - ahf:112708922 973.385