Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211474g00028 ATGGACACAATCAAGTCCTTCAAGGGCTACGGCAAAGTCGATGAGGCCGAGCAACAAGCCTATCAGAAGAAGACACGTAAGCGCATCATAATCCTCATCGTTTCATCACTAATCCTATTAGCGGCGATTATCGCCGCAGTAGCAGGAATCGTCATACACACGCGCAACACCAAATCATCATCACCTTCTTCTAACTCGGTCCCAACACCCGAGTTAACTCCGGCCGCGTCACTCAAAGCGGTTTGCGATGTGACTCAGCACCCTAGCTCGTGCTTCGTCGCCATCTCCTCCGTCGCAGACTCCAACACCACCGACCCCAAGCTCCTCTTCCGCCTCTCCCTCCGTGTCGCCATTGACGAGCTCTCCAAGCTCTCCAAGCAGCTTCCGTCGAAGCTTCGCGAATCTGCGAAGAACGATTCGCGGCTCCAAAAGGCGATCGGTGTGTGCGAAACCGTGTTCGACGACGCGCTGGATCGCCTCAACGAGTCGATCGGAGTCGCCGAGGAAGGACGGAAGGTGCTGGCGGCGGGGAAGATAACCGATCTGGAAACGTGGCTGAGCGCCGCCATAACGAACCAGGAAACGTGCATTGACGCGATCTCCGAGGTGGATTCCTCCGCCGCGCGCGGCGTTCTCGGAGAAGCTCAAACAGCGATGCAGAACTCTACAGAGTACGCGAGCAACAGTTTGGCGATTGTGACGAGGATCTTAGGGCTGATTTCGAAGTTCGATGCGCCGGTTCACCGGCGCCGGAGGTTACTCGGGTTTCCGGAGTGGGTGACGGCGGCGGATAGGAGGCTTCTGGCGGCGAATGTGAACGAAACAGAGACGTATGTGGTGGTGGCGCAGGACGGTAGCGGGGACTTCAGCACGATAACGGCGGCGGTGCAGAGCTTGAAGAAGAAGAGCTTGAAGAGGCAGGTGATTTATGTGAAGGCAGGGATTTACAAAGAGAACATCGATTTGGATAAGAACACCTGGAATGTGATGATCTACGGCGATGGAAAGAGCAAAACCCTCGTCTCCGGTAGCCGGAACTTCATCGACGGCACAGCTACATTTGAGACTGCCACTTTCGCCGTTAAGGGAAAGGGATTCATAGCTAAAGACATAGGTTTCGTGAACAGCGCAGGCGCATCAAAGCACCAAGCTGTGGCACTCCGATCCGGCTCAGACCGCTCTGTGTTCTACCGTTGCTCATTCGACGGCTTCCAAGACACCCTCTATGCCCATTCCAACCGCCAATTCTACCGCGAATGTGACATCACAGGCACCATAGACTTCATATTTGGCAATGCAGCAGTTGTGTTCCAAAGCTGCAGGATCATGCCAAGGCAGCCACTACCAAACCAATTCAATACCATTACAGCCCAAGGGAAAAAGGACCCTAACCAGAACACTGGCATTGTGATCCAGAAATCCTCANNNNNNNNNNTACCCTTGATAAGGACAATCTCACTGCCCCAACATACCTTGGTAGGCCATGGAAGGAGTACTCCACCACTGTGA 1509 0.5388 MDTIKSFKGYGKVDEAEQQAYQKKTRKRIIILIVSSLILLAAIIAAVAGIVIHTRNTKSSSPSSNSVPTPELTPAASLKAVCDVTQHPSSCFVAISSVADSNTTDPKLLFRLSLRVAIDELSKLSKQLPSKLRESAKNDSRLQKAIGVCETVFDDALDRLNESIGVAEEGRKVLAAGKITDLETWLSAAITNQETCIDAISEVDSSAARGVLGEAQTAMQNSTEYASNSLAIVTRILGLISKFDAPVHRRRRLLGFPEWVTAADRRLLAANVNETETYVVVAQDGSGDFSTITAAVQSLKKKSLKRQVIYVKAGIYKENIDLDKNTWNVMIYGDGKSKTLVSGSRNFIDGTATFETATFAVKGKGFIAKDIGFVNSAGASKHQAVALRSGSDRSVFYRCSFDGFQDTLYAHSNRQFYRECDITGTIDFIFGNAAVVFQSCRIMPRQPLPNQFNTITAQGKKDPNQNTGIVIQKSSXXXXPLIRTISLPQHTLVGHGRSTPPL 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211474g00028 502 Gene3D Invertase/pectin methylesterase inhibitor family protein 76 237 IPR035513 -
Stsc211474g00028 502 SMART PMEI_2 73 232 IPR006501 GO:0004857
Stsc211474g00028 502 ProSitePatterns Pectinesterase signature 1. 303 322 IPR018040 -
Stsc211474g00028 502 Pfam Plant invertase/pectin methylesterase inhibitor 78 232 IPR006501 GO:0004857
Stsc211474g00028 502 ProSitePatterns Pectinesterase signature 2. 422 431 IPR033131 -
Stsc211474g00028 502 NCBIfam pectinesterase inhibitor domain 66 232 IPR006501 GO:0004857
Stsc211474g00028 502 CDD PMEI-like_3 80 236 - -
Stsc211474g00028 502 SUPERFAMILY Pectin lyase-like 277 475 IPR011050 -
Stsc211474g00028 502 Gene3D - 272 491 IPR012334 -
Stsc211474g00028 502 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 78 237 IPR035513 -
Stsc211474g00028 502 Pfam Pectinesterase 279 479 IPR000070 GO:0030599|GO:0042545
Stsc211474g00028 502 PANTHER PECTINESTERASE 35 476 - -
Stsc211474g00028 502 FunFam Putative pectinesterase 57 275 474 - -
Stsc211474g00028 502 FunFam Pectinesterase 74 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211474g00028 Stsc-Chr211474 217554 221174 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211474g00028 1 473 Carbohydrate Esterase AT1G53840 57.084 0.0 535
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211474g00028 - - gmx:100777128 674.47