Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211474g00014 ATGGAGGGAAGTAGTTCTTCTTCTTCTGATGTAGATGATTCACTACTCTTAGTTGATGATTTCTACTTTTCAGCCCTCTTTGATTCTGAAGAACTGTTCCCAATCAATGATGAGAAATATGCAGAGGAGCTTCACTTACAAGAAGCTCTCTATTCCTCTGCTACAACCCTCAAGAGAAAACTCGAAGATGTTGTTTTTCTTGTTGGTGAATCTTCTAATACTACTCATCAATCTCATGATGATGATCATCATCAAGTGTTGTGTGCTATTTGCATGGATTCAAAGCCATTTCAAGAAATTTTCAGCAACCAAAGCTGCAACCACTCTTTCTGTGTTGACTGCATTGGAAAATATGTAGCTGCAAAGATTCAAGAGAATATATCAAATGTGAAGTGTCCTGAACCAAGCTGCATTGGAATCTTGGAGCCTGAGAATTGCAGGCAAATAATTCCAAAAGAAGTGTTTGAAAGATGGGAGAATGCACTCTGTGAGAATCTTGTTCTTGCAACATCTGAGAGATTCTATTGCCCTTTCAAGGATTGTTCAGCAATGCTGGTGAATGATGAAGTTGTTGTGACTTCTACTGAGTGTCCACATTGTCACAGATTGTTCTGTGCACAGTGTGAGGTTCCATGGCATGATGGGGTTGAATGTGGTGAGTTTATGAGTTTGAATGAAGATGAAAGAGAGAAGGAAGATCTTTTGGTGATGAATCTTGCAAAGGCTAAGAGATGGAGAAGGTGTTCTAAGTGCAGAATCTATGTTGAAAAAAATGAGGGATGTTCACACATTTCTTGCAGGTTTGGTTAA 810 0.3901 MEGSSSSSSDVDDSLLLVDDFYFSALFDSEELFPINDEKYAEELHLQEALYSSATTLKRKLEDVVFLVGESSNTTHQSHDDDHHQVLCAICMDSKPFQEIFSNQSCNHSFCVDCIGKYVAAKIQENISNVKCPEPSCIGILEPENCRQIIPKEVFERWENALCENLVLATSERFYCPFKDCSAMLVNDEVVVTSTECPHCHRLFCAQCEVPWHDGVECGEFMSLNEDEREKEDLLVMNLAKAKRWRRCSKCRIYVEKNEGCSHISCRFG 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211474g00014 269 Gene3D - 215 268 - -
Stsc211474g00014 269 SUPERFAMILY RING/U-box 83 165 - -
Stsc211474g00014 269 CDD BRcat_RBR_unk 171 221 - -
Stsc211474g00014 269 SMART ibrneu5 156 218 IPR002867 GO:0008270
Stsc211474g00014 269 FunFam RBR-type E3 ubiquitin transferase 83 169 - -
Stsc211474g00014 269 ProSiteProfiles TRIAD supradomain profile. 84 269 IPR044066 -
Stsc211474g00014 269 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 169 IPR013083 -
Stsc211474g00014 269 SUPERFAMILY RING/U-box 156 221 - -
Stsc211474g00014 269 ProSitePatterns Zinc finger RING-type signature. 106 115 IPR017907 -
Stsc211474g00014 269 SUPERFAMILY RING/U-box 229 266 - -
Stsc211474g00014 269 Pfam IBR domain, a half RING-finger domain 156 218 IPR002867 GO:0008270
Stsc211474g00014 269 ProSiteProfiles Zinc finger RING-type profile. 88 133 IPR001841 -
Stsc211474g00014 269 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 60 266 IPR031127 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211474g00014 Stsc-Chr211474 110803 111612 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211474g00014 39 267 C3H Transcription Factor Family AT2G19610 23.868 1.21e-18 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211474g00014 K11975 - qsa:O6P43_018461 328.946