Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211474g00011 ATGGCTTCTTCATCTTCATCGTCAAAGATGAAAGGCATTTCTACAACAACAACACCAACACGTAGAAGGAAGATCGAGATCAAGAAAGTTGAGCAAAGCAACAAGCGCCACGTCACCTTCTCCAAACGAAAACTTGGTCTCTTCAACACGGTCACGGAGCTTTCCATCCTCTGCAATGCGGAAACCGTCTTGATCGTCTCCTCGCAGAACGGAAAGCTTTACGTCTGCGGCTATCCTTCGCCGGACGCCGTCATCCGCCGTTTCCTCAACGGAGGAGATTCCGATTCCGCTCCTAAGGTAGGCTTGAAGAAGAAGCAAAACGAGAGGTTGGAAGCCCTAAGGGCGCAGTATGAGTCGGCTCAAGAAACTCTCAGCGAAGAGAAGAAGCTTCTAGAAGAGGCCGAGATGGCGAGAAAGAACTGCAACCATGGCGGTGACAGCGGCAGCGGCGGGTTAGGGTTTTCGAATCAGTGGTGGGAGAATCCAATTGAGGAGATGGATCTGGAGGAGCTTGTGAAGTTCAAAGAATCATTGGAACAGTTGAAGATGAATCTGGTTGCAACCGCTGAACGGAGGATCATGTTCAAAGAGATGATGCCGCCGTTGATGCCATCCCTTGCTACTACTCCAAGGCAAACTAGGTTTTCCAATTTTTCTTCAATCTTGAACAATAATGGCGGATTCATCAGCTCTGTTCAACCACAGCAGCAGCAAGCATGTTGGAATAATAATTGGAGCAATAACATGATCATCAATAACGGAATTATTGCTACTAGTAGTAGCAGTAACAATCTGAATTCTTTAGGAGCATGGGATTTTGGGAACAATGCTATCATTGCTGCTGCTAATGGTAATGGTAATAGTGATGGTTCTTTTCTTCCTAACAATGGTTTTGGCCGTTATTATTAA 909 0.4609 MASSSSSSKMKGISTTTTPTRRRKIEIKKVEQSNKRHVTFSKRKLGLFNTVTELSILCNAETVLIVSSQNGKLYVCGYPSPDAVIRRFLNGGDSDSAPKVGLKKKQNERLEALRAQYESAQETLSEEKKLLEEAEMARKNCNHGGDSGSGGLGFSNQWWENPIEEMDLEELVKFKESLEQLKMNLVATAERRIMFKEMMPPLMPSLATTPRQTRFSNFSSILNNNGGFISSVQPQQQQACWNNNWSNNMIINNGIIATSSSSNNLNSLGAWDFGNNAIIAAANGNGNSDGSFLPNNGFGRYY 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211474g00011 302 MobiDBLite consensus disorder prediction 1 21 - -
Stsc211474g00011 302 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 29 75 IPR002100 GO:0003677|GO:0046983
Stsc211474g00011 302 Gene3D - 33 118 IPR036879 GO:0003677|GO:0046983
Stsc211474g00011 302 Coils Coil 103 140 - -
Stsc211474g00011 302 PRINTS MADS domain signature 42 57 IPR002100 GO:0003677|GO:0046983
Stsc211474g00011 302 PRINTS MADS domain signature 22 42 IPR002100 GO:0003677|GO:0046983
Stsc211474g00011 302 PRINTS MADS domain signature 57 78 IPR002100 GO:0003677|GO:0046983
Stsc211474g00011 302 MobiDBLite consensus disorder prediction 1 20 - -
Stsc211474g00011 302 PANTHER MADS BOX PROTEIN 22 185 - -
Stsc211474g00011 302 ProSiteProfiles MADS-box domain profile. 20 80 IPR002100 GO:0003677|GO:0046983
Stsc211474g00011 302 SMART madsneu2 20 79 IPR002100 GO:0003677|GO:0046983
Stsc211474g00011 302 SUPERFAMILY SRF-like 21 90 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211474g00011 Stsc-Chr211474 98428 99336 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211474g00011 22 200 Type I MADS-box Gene Family AT5G60440 32.418 5.52e-22 92.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Stsc211474g00011 SRF-TF 3e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211474g00011 - - ahf:112729126 309.686