Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211473g00010 ATGGCTAATCTCATCTTTTTCATTGCTCTGTTGGTATTGCTCTTACCTATTTCAGCTGCTTTATTAGATGCTTGGTTAACTGATGCTAATGCAACTTTCTATGGTGACATGTACGGTGGAGGAACCATGCAGGGCGCATGTGGCTATGGTGATCTCTATAAGCAAGGTTATGGTCTTGAGACCACAGCACTAAGCACTGCCCTATTCAACAATGGTTATGCATGTGGAGCATGTTTTGAGATTGTTTGTAGGAACATTCCCGGCTGGAATTATTGCAAGAAAGGCTCAATAGTAGTAACTGCAACAAACTTCTGTCCGCCAAATTATGGAGGGGGAACTGGTCATTGGTGCAACCCTCCTTATAAACACTTCGATTTATCAATGAAGATGTTCACAACCATAGCAGAATATAGAGCAGGGATTGTACCAATTTATTATAGAAGAGTTCCATGCCATAAACAAAGTGGTGTCAAGTTTGAGTTGAAAGGGAATCCTTATTGGTTTATGGTGTTGGTGTACAATGTTGGTAATGCTGGTGATGTTTATGGTGTTAGAATCAAAGGCTCCAACACTGGCTGGCTCACTATGTCAAAGAATTGGGGACAAAATTGGGACATTCGGGGTAACTTGGTTGGACAAAGGTTGTCATTTTTGGTCACAACTAGTGATGGGAAAACCTTGGAGTTGGAAGATGTTGCTCCTTCGAATTGGCAATTTGGACAATCTTATGAGGGCAAATATAATTTTTAG 750 0.4093 MANLIFFIALLVLLLPISAALLDAWLTDANATFYGDMYGGGTMQGACGYGDLYKQGYGLETTALSTALFNNGYACGACFEIVCRNIPGWNYCKKGSIVVTATNFCPPNYGGGTGHWCNPPYKHFDLSMKMFTTIAEYRAGIVPIYYRRVPCHKQSGVKFELKGNPYWFMVLVYNVGNAGDVYGVRIKGSNTGWLTMSKNWGQNWDIRGNLVGQRLSFLVTTSDGKTLELEDVAPSNWQFGQSYEGKYNF 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211473g00010 249 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 44 156 IPR007112 -
Stsc211473g00010 249 Pfam Expansin C-terminal domain 157 234 IPR007117 -
Stsc211473g00010 249 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 166 245 IPR007117 -
Stsc211473g00010 249 SUPERFAMILY PHL pollen allergen 154 245 IPR036749 -
Stsc211473g00010 249 Gene3D - 18 152 IPR036908 -
Stsc211473g00010 249 PANTHER EXPANSIN-A15 7 246 IPR002963 GO:0009664
Stsc211473g00010 249 SMART dpbb_1 61 146 IPR007112 -
Stsc211473g00010 249 Pfam Lytic transglycolase 61 146 IPR009009 -
Stsc211473g00010 249 SUPERFAMILY Barwin-like endoglucanases 25 174 IPR036908 -
Stsc211473g00010 249 Gene3D - 153 249 IPR036749 -
Stsc211473g00010 249 PRINTS Expansin/Lol pI family signature 139 155 IPR007118 GO:0005576
Stsc211473g00010 249 PRINTS Expansin/Lol pI family signature 193 207 IPR007118 GO:0005576
Stsc211473g00010 249 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Stsc211473g00010 249 PRINTS Expansin/Lol pI family signature 25 40 IPR007118 GO:0005576
Stsc211473g00010 249 PRINTS Expansin/Lol pI family signature 231 245 IPR007118 GO:0005576
Stsc211473g00010 249 PRINTS Expansin/Lol pI family signature 43 61 IPR007118 GO:0005576
Stsc211473g00010 249 CDD DPBB_EXPA_N 27 151 - -
Stsc211473g00010 249 PRINTS Expansin signature 155 167 IPR002963 GO:0009664
Stsc211473g00010 249 PRINTS Expansin signature 56 70 IPR002963 GO:0009664
Stsc211473g00010 249 PRINTS Expansin signature 202 223 IPR002963 GO:0009664
Stsc211473g00010 249 PRINTS Expansin signature 97 107 IPR002963 GO:0009664
Stsc211473g00010 249 PRINTS Expansin signature 167 188 IPR002963 GO:0009664
Stsc211473g00010 249 PRINTS Expansin signature 114 131 IPR002963 GO:0009664
Stsc211473g00010 249 PRINTS Expansin signature 131 144 IPR002963 GO:0009664
Stsc211473g00010 249 PRINTS Expansin signature 231 247 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211473g00010 Stsc-Chr211473 41440 42805 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211473g00010 17 249 Expansin Gene Family AT5G39280 61.803 4.58e-107 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211473g00010 - - gab:108460016 343.199