Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211473g00009 ATGGCTAATCTCATCTTTCTTATTTCTCTGTTGGTGTTGCTCCAAGCTATTATTTCAGCAGCTGTTTGGTTATCTGATGCCAATGCAACATTCTATGGTGACATAGATGGTGGAGGAACCATGCAGGGTGCATGTGGCTATGGTGATCTCTTCAAGCAAGGTTATGGTCTTGAGACCACAGCACTAAGCACTGCCCTATTCAACAATGGTTATGCATGTGGAGCATGTTTTGAGATTGTTTGTAGGAACCAGACCAATTGGAGTTATTGCAAAAAAGGTGTAGGCCCAATAAGAGTAACTGCAACAAACTTCTGTCCGCCAAATTATGGAGAGGGAACTGGTCATTGGTGCAACCCTCCATATAAACACTTCGATTTATCAATGAAGATGTTCACAACCATAGCAGAATATAGAGCAGGGATTGTACCAATTTATTATAGAAGAATTCCATGCCATAAACAAGGTGGTGTCAAGTTTGAGTTGAAAGGGAATCCTTATTGGTTTATGGTATTGGTGTACAATGTTGGTAATGCTGGTAATGTTTCTGGTGTTAGAATCAAAGGCTCAAACACTGGCTGGCTCACTATGTCAAAAAATTGGGGACAAAATTGGGACATTGGGGGTAACTTTATTGGACAAAGCTTGTCATTCATGGTCACAACTAGTGATGGGAAAACCTTGGAGTTTGATCAAGTTGTTCCTTCTAATTGGCAATTTGGGCTATCCTATGAGGGCAAACATAATTTTTAG 750 0.404 MANLIFLISLLVLLQAIISAAVWLSDANATFYGDIDGGGTMQGACGYGDLFKQGYGLETTALSTALFNNGYACGACFEIVCRNQTNWSYCKKGVGPIRVTATNFCPPNYGEGTGHWCNPPYKHFDLSMKMFTTIAEYRAGIVPIYYRRIPCHKQGGVKFELKGNPYWFMVLVYNVGNAGNVSGVRIKGSNTGWLTMSKNWGQNWDIGGNFIGQSLSFMVTTSDGKTLEFDQVVPSNWQFGLSYEGKHNF 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211473g00009 249 PRINTS Expansin signature 167 188 IPR002963 GO:0009664
Stsc211473g00009 249 PRINTS Expansin signature 231 247 IPR002963 GO:0009664
Stsc211473g00009 249 PRINTS Expansin signature 202 223 IPR002963 GO:0009664
Stsc211473g00009 249 PRINTS Expansin signature 54 68 IPR002963 GO:0009664
Stsc211473g00009 249 PRINTS Expansin signature 155 167 IPR002963 GO:0009664
Stsc211473g00009 249 PRINTS Expansin signature 114 131 IPR002963 GO:0009664
Stsc211473g00009 249 PRINTS Expansin signature 131 144 IPR002963 GO:0009664
Stsc211473g00009 249 PRINTS Expansin signature 97 107 IPR002963 GO:0009664
Stsc211473g00009 249 PRINTS Expansin/Lol pI family signature 41 59 IPR007118 GO:0005576
Stsc211473g00009 249 PRINTS Expansin/Lol pI family signature 193 207 IPR007118 GO:0005576
Stsc211473g00009 249 PRINTS Expansin/Lol pI family signature 139 155 IPR007118 GO:0005576
Stsc211473g00009 249 PRINTS Expansin/Lol pI family signature 231 245 IPR007118 GO:0005576
Stsc211473g00009 249 PRINTS Expansin/Lol pI family signature 23 38 IPR007118 GO:0005576
Stsc211473g00009 249 PRINTS Expansin/Lol pI family signature 63 81 IPR007118 GO:0005576
Stsc211473g00009 249 SMART dpbb_1 59 146 IPR007112 -
Stsc211473g00009 249 Pfam Lytic transglycolase 59 146 IPR009009 -
Stsc211473g00009 249 SUPERFAMILY PHL pollen allergen 153 245 IPR036749 -
Stsc211473g00009 249 SUPERFAMILY Barwin-like endoglucanases 13 174 IPR036908 -
Stsc211473g00009 249 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 166 245 IPR007117 -
Stsc211473g00009 249 PANTHER EXPANSIN-A15 11 246 IPR002963 GO:0009664
Stsc211473g00009 249 Gene3D - 15 152 IPR036908 -
Stsc211473g00009 249 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 42 156 IPR007112 -
Stsc211473g00009 249 Pfam Expansin C-terminal domain 157 234 IPR007117 -
Stsc211473g00009 249 CDD DPBB_EXPA_N 25 151 - -
Stsc211473g00009 249 Gene3D - 154 249 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211473g00009 Stsc-Chr211473 37213 38508 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211473g00009 26 249 Expansin Gene Family AT5G39280 62.946 6.18e-106 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211473g00009 - - gmx:100799337 346.28